RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 SLC14A1Q13336 389 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 DDX39BQ13838 428 aaKnown RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 SQLEQ14534 574 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 KRT72Q14CN4 511 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 SPIN4Q56A73 249 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 C6orf136Q5SQH8 315 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 CACHD1Q5VU97 1274 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 KIAA1614Q5VZ46 1190 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ZNF425Q6IV72 752 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ZNF655Q8N720 491 aaPredicted RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 APOLD1Q96LR9 279 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 NRTNQ99748 197 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 LRFN3Q9BTN0 628 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ACPTQ9BZG2 426 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ZMYND15Q9H091 742 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 SEMA6CQ9H3T2 930 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 FSCN3Q9NQT6 498 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 FARSBQ9NSD9 589 aaKnown RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 ARL8BQ9NVJ2 186 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 TMEM45AQ9NWC5 275 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 DMDP11532 3685 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 IGKV1-8A0A0C4DH67 115 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 LRP3O75074 770 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 CLEC3AO75596 197 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ATP5HO75947 161 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 CDH3P22223 829 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 GRK6P43250 576 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 MEF2AQ02078 507 aaPredicted RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 CUL3Q13618 768 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 UBAP2LQ14157 1087 aaKnown RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 FAM219BQ5XKK7 198 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 SCIMPQ6UWF3 145 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ASRGL1Q7L266 308 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 ZNF761Q86XN6 746 aaPredicted RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 TREML1Q86YW5 311 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 CPSF7Q8N684 471 aaKnown RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 FLVCR1-AS1Q8TAF5 88 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 RSC1A1Q92681 617 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 CMTM5Q96DZ9 223 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 HBEGFQ99075 208 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 DPYSL5Q9BPU6 564 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 KCNH6Q9H252 994 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 SLC6A20Q9NP91 592 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 DNAAF2Q9NVR5 837 aaKnown RBP13.13□□□□□ -0.31
VAPB-202ENST00000395802 CCL27Q9Y4X3 112 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 PTGDR2Q9Y5Y4 395 aa13.13□□□□□ -0.31
VAPB-202ENST00000395802 OR2A25A4D2G3 310 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 EME2A4GXA9 379 aaPredicted RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 MAGEB17A8MXT2 336 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 TRIM38O00635 465 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 FLRT2O43155 660 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 SIGLEC6O43699 453 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 MNAT1P51948 309 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 ARFIP1P53367 373 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 HMGCS1Q01581 520 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 ACSM2AQ08AH3 577 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 MAPRE2Q15555 327 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 CLPPQ16740 277 aaPredicted RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 ZC3H12BQ5HYM0 836 aaKnown RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 ACSM2BQ68CK6 577 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 IRGCQ6NXR0 463 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 FIGLAQ6QHK4 219 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 PAQR7Q86WK9 346 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 ZFAND4Q86XD8 727 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 EID2Q8N6I1 236 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 SRFBP1Q8NEF9 429 aaKnown RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 OR2T11Q8NH01 316 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 BAHD1Q8TBE0 780 aaPredicted RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 RERGQ96A58 199 aaPredicted RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 DMRT3Q9NQL9 472 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 RUVBL1Q9Y265 456 aaKnown RBP13.12□□□□□ -0.31
VAPB-202ENST00000395802 AP1M2Q9Y6Q5 423 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 CAPN7Q9Y6W3 813 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 WDFY4Q6ZS81 3184 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 PCDH15Q96QU1 1955 aa13.12□□□□□ -0.31
VAPB-202ENST00000395802 IGHV1OR21-1A0A087WYE8 117 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 TLCD2A6NGC4 264 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 URADA6NGE7 173 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 CAPN5O15484 640 aaPredicted RBP13.11□□□□□ -0.31
VAPB-202ENST00000395802 HNRNPCL1O60812 293 aaKnown RBP13.11□□□□□ -0.31
VAPB-202ENST00000395802 SEMA3DO95025 777 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 CKMT1AP12532 417 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 MAGP20916 626 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 RASSF2P50749 326 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 DAB2P98082 770 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 TGM3Q08188 693 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 TMEM35AQ53FP2 167 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 WDR74Q6RFH5 385 aaPredicted RBP13.11□□□□□ -0.31
VAPB-202ENST00000395802 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.11□□□□□ -0.31
VAPB-202ENST00000395802 MIER2Q8N344 545 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 MFSD9Q8NBP5 474 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 NCSTNQ92542 709 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 ATOH1Q92858 354 aaPredicted RBP13.11□□□□□ -0.31
VAPB-202ENST00000395802 SLC7A6OSQ96CW6 309 aaPredicted RBP13.11□□□□□ -0.31
VAPB-202ENST00000395802 TCTN2Q96GX1 697 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 CATSPER2Q96P56 530 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 QRFPRQ96P65 431 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 LRMDAQ9H2I8 198 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 ASIC5Q9NY37 505 aa13.11□□□□□ -0.31
VAPB-202ENST00000395802 MAPRE3Q9UPY8 281 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms