RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 LCMT2O60294 686 aaKnown RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 MED26O95402 600 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 ITGB2P05107 769 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 RBP1P09455 135 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 PIM1P11309 404 aaPredicted RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 RPS18P62269 152 aaKnown RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 REEP5Q00765 189 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 COL9A2Q14055 689 aaPredicted RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 CAMKVQ8NCB2 501 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 ESAMQ96AP7 390 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 FKBP10Q96AY3 582 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 TM4SF19Q96DZ7 209 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 AIF1LQ9BQI0 150 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 SLC22A11Q9NSA0 550 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 ZNF358Q9NW07 568 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 GPN3Q9UHW5 284 aaPredicted RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 TCFL5Q9UL49 500 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 MAP2K7O14733 419 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 KLK8O60259 260 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 SHBGP04278 402 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 PRKAR1AP10644 381 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 HSD17B3P37058 310 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 MEF2AQ02078 507 aaPredicted RBP20.69■□□□□ 0.9
CLN3-207ENST00000395653 PDK4Q16654 411 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 FBXO48Q5FWF7 155 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 MLIPQ5VWP3 458 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 MRPL14Q6P1L8 145 aaKnown RBP20.69■□□□□ 0.9
CLN3-207ENST00000395653 C16orf46Q6P387 395 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 SLCO4C1Q6ZQN7 724 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 ASPGQ86U10 573 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 SPNS1Q9H2V7 528 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 CDC14AQ9UNH5 594 aa20.69■□□□□ 0.9
CLN3-207ENST00000395653 IGSF10Q6WRI0 2623 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 FAM208BQ5VWN6 2430 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ERVH48-1M5A8F1 160 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 OR1F1O43749 312 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ALBP02768 609 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 SLC35G6P0C7Q6 338 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 C1GALT1C1LP0DN25 315 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 SCTRP47872 440 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 NFKB2Q00653 900 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 FAM53BQ14153 422 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ERV3-1Q14264 604 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 RASA2Q15283 850 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 NDUFA9Q16795 377 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ATG9BQ674R7 924 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 LCA5Q86VQ0 697 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 TDRPQ86YL5 185 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ZNF740Q8NDX6 193 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 MZB1Q8WU39 189 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 TTC9Q92623 222 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 EHD1Q9H4M9 534 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ZNF304Q9HCX3 659 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 XPR1Q9UBH6 696 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 ASB1Q9Y576 335 aa20.68■□□□□ 0.9
CLN3-207ENST00000395653 CLGNO14967 610 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 CCNT2O60583 730 aaKnown RBP20.67■□□□□ 0.9
CLN3-207ENST00000395653 KLF7O75840 302 aaPredicted RBP20.67■□□□□ 0.9
CLN3-207ENST00000395653 GFAPP14136 432 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 CXCR2P25025 360 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 VARSP26640 1264 aaKnown RBP20.67■□□□□ 0.9
CLN3-207ENST00000395653 AHRP35869 848 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 ALDH18A1P54886 795 aaKnown RBP20.67■□□□□ 0.9
CLN3-207ENST00000395653 SLC9A5Q14940 896 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 SETDB1Q15047 1291 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 UGT8Q16880 541 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 COX15Q7KZN9 410 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 OVCH1Q7RTY7 1134 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 DTWD1Q8N5C7 304 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 METTL27Q8N6F8 245 aaPredicted RBP20.67■□□□□ 0.9
CLN3-207ENST00000395653 ACMSDQ8TDX5 336 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 SLC13A3Q8WWT9 602 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 CAVIN3Q969G5 261 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 UBL7Q96S82 380 aaPredicted RBP20.67■□□□□ 0.9
CLN3-207ENST00000395653 PARD6BQ9BYG5 372 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 DRC3Q9H069 523 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 SLC26A1Q9H2B4 701 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 OPTCQ9UBM4 332 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 TBK1Q9UHD2 729 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 ZFP69BQ9UJL9 534 aa20.67■□□□□ 0.9
CLN3-207ENST00000395653 K7EPI3 171 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 PRPF4O43172 522 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLN3-207ENST00000395653 H2AFYO75367 372 aaKnown RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 NUDT17P0C025 328 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 OR1D4P47884 311 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 AGTR2P50052 363 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 PWP1Q13610 501 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 IL10RAQ13651 578 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 NAA30Q147X3 362 aaPredicted RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 PFKFB4Q16877 469 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 ATP1A1-AS1Q5TC04 95 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 TMEM214Q6NUQ4 689 aaKnown RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 SNX31Q8N9S9 440 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 ANKRD53Q8N9V6 530 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 WDR34Q96EX3 536 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 SCYL1Q96KG9 808 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 MRPL57Q9BQC6 102 aaKnown RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 PITHD1Q9GZP4 211 aaPredicted RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 WDR54Q9H977 334 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms