RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MRPL19P49406 292 aaKnown RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 MAZP56270 477 aaKnown RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 SP140Q13342 867 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 GTF2H2Q13888 395 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 RPS6KA2Q15349 733 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 TCEA2Q15560 299 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 GTF2H2CQ6P1K8 395 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 LETMD1Q6P1Q0 360 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 SPRED1Q7Z699 444 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 DCUN1D3Q8IWE4 304 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 DCBLD1Q8N8Z6 715 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 CCDC74AQ96AQ1 378 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 RAD51AP1Q96B01 352 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 CDK15Q96Q40 435 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 IMP3Q9NV31 184 aaKnown RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 RIC8BQ9NVN3 520 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 OR6C2Q9NZP2 312 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 C6orf203Q9P0P8 240 aaPredicted RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 EPHA6Q9UF33 1036 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 PTBP2Q9UKA9 531 aaKnown RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 CROTQ9UKG9 612 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 NDUFAF1Q9Y375 327 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 GPR45Q9Y5Y3 372 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 LRP4O75096 1905 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 CASQ2O14958 399 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 ANGPT2O15123 496 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 DUX1O43812 170 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PSIP1O75475 530 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 CPNE6O95741 557 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 CAPN1P07384 714 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 TCN1P20061 433 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 CAPN3P20807 821 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PEX2P28328 305 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ARL1P40616 181 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 PREPP48147 710 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 DIO3P55073 304 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 MRPS22P82650 360 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 BLMHQ13867 455 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 TRIM25Q14258 630 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 ARHGAP19Q14CB8 494 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PHKG1Q16816 387 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 VPS26BQ4G0F5 336 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 COQ5Q5HYK3 327 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SAMD4BQ5PRF9 694 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 RETREG3Q86VR2 466 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PLXDC1Q8IUK5 500 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PQLC1Q8N2U9 271 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 LILRA3Q8N6C8 439 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 FAM156AQ8NDB6 213 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 OR2T11Q8NH01 316 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 METTL6Q8TCB7 284 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PATE1Q8WXA2 126 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ASB11Q8WXH4 323 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 AHCYL2Q96HN2 611 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 FERD3LQ96RJ6 166 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 EGFL8Q99944 293 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 KLHL4Q9C0H6 718 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 LRRN3Q9H3W5 708 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 CAAP1Q9H8G2 361 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 AIG1Q9NVV5 245 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 TMEM181Q9P2C4 612 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ENTPD2Q9Y5L3 495 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 CFAP54Q96N23 3096 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PLXNB3Q9ULL4 1909 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 IGHV1OR21-1A0A087WYE8 117 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 DCDC2BA2VCK2 349 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PRORSD1PA6NEY8 169 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ZNF839A8K0R7 811 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 TAPBPO15533 448 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 UBXN7O94888 489 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 OTCP00480 354 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 CATP04040 527 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 ENO2P09104 434 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 ALDH4A1P30038 563 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SHMT2P34897 504 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 HSPA7P48741 367 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SLC7A2P52569 658 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ERVK-8P63133 956 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 KLC1Q07866 573 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 TRA2AQ13595 282 aaKnown RBP eCLIP9.82□□□□□ -0.84
VPS53-202ENST00000389040 GPR18Q14330 331 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 TRIP10Q15642 601 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 LPCAT4Q643R3 524 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SULT1C3Q6IMI6 304 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 IRGCQ6NXR0 463 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PRMT9Q6P2P2 845 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 BLOC1S3Q6QNY0 202 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SCIMPQ6UWF3 145 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SLCO6A1Q86UG4 719 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PDSS2Q86YH6 399 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 RASGRP3Q8IV61 690 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 CHCHD4Q8N4Q1 142 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 OR4F6Q8NGB9 312 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 UBTD2Q8WUN7 234 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 SKA2Q8WVK7 121 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 ATP6V1E2Q96A05 226 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 RHBDF1Q96CC6 855 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ZDHHC12Q96GR4 267 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PHF12Q96QT6 1004 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 GFM1Q96RP9 751 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms