RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CD97P48960 835 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 MAT1AQ00266 395 aaKnown RBP17.45■□□□□ 0.38
CLN3-202ENST00000355477 SLC7A5Q01650 507 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 MEF2AQ02078 507 aaPredicted RBP17.45■□□□□ 0.38
CLN3-202ENST00000355477 Q0VFX4 171 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 AIMP2Q13155 320 aaKnown RBP17.45■□□□□ 0.38
CLN3-202ENST00000355477 VWA5B1Q5TIE3 1220 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 ATG9BQ674R7 924 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 JMJD6Q6NYC1 403 aaPredicted RBP17.45■□□□□ 0.38
CLN3-202ENST00000355477 CYS1Q717R9 158 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 PRSS41Q7RTY9 318 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 Q8NA96 180 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 ABHD11Q8NFV4 315 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 OR4K1Q8NGD4 311 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 OR9A4Q8NGU2 314 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 ATL1Q8WXF7 558 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 ANKRD7Q92527 254 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 MIB2Q96AX9 1013 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 THAP11Q96EK4 314 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 RAB17Q9H0T7 212 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 C5AR2Q9P296 337 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 DOPEY2Q9Y3R5 2298 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 UTP20O75691 2785 aaKnown RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 PABPN1LA6NDY0 278 aaKnown RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 TTLL8A6PVC2 850 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 SORBS2O94875 1100 aaKnown RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 WISP3O95389 354 aaPredicted RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 ANXA5P08758 320 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 ITGA3P26006 1051 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 CCR8P51685 355 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 EFNA3P52797 238 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 CAV1Q03135 178 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 NDUFA9Q16795 377 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 TUBB8Q3ZCM7 444 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 CATSPEREQ5SY80 951 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 TMEM214Q6NUQ4 689 aaKnown RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 CCDC25Q86WR0 208 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 PARP9Q8IXQ6 854 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 KCT2Q8NC54 265 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 ZNF740Q8NDX6 193 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 NEIL2Q969S2 332 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 C8orf44Q96CB5 159 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 UNKQ9C0B0 810 aaKnown RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 LRRC4CQ9HCJ2 640 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 GPAMQ9HCL2 828 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 MKKSQ9NPJ1 570 aaPredicted RBP17.44■□□□□ 0.38
CLN3-202ENST00000355477 LUZP4Q9P127 313 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 MAP4K5Q9Y4K4 846 aa17.44■□□□□ 0.38
CLN3-202ENST00000355477 ESYT3A0FGR9 886 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 IDSB3KWA1 339 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 PRPF4O43172 522 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLN3-202ENST00000355477 MAGEA4P43358 317 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 EMP2P54851 167 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 POU4F1Q01851 419 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 TSNQ15631 228 aaKnown RBP17.43■□□□□ 0.38
CLN3-202ENST00000355477 C18orf21Q32NC0 220 aaPredicted RBP17.43■□□□□ 0.38
CLN3-202ENST00000355477 SLC6A19Q695T7 634 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 ASPGQ86U10 573 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 HPS6Q86YV9 775 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 ZC3H7AQ8IWR0 971 aaKnown RBP17.43■□□□□ 0.38
CLN3-202ENST00000355477 SPATA6LQ8N4H0 392 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 MFSD9Q8NBP5 474 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 CAMKVQ8NCB2 501 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 SLC13A3Q8WWT9 602 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 CDKL2Q92772 493 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 MOCOSQ96EN8 888 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 TSNARE1Q96NA8 513 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 RBBP8Q99708 897 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 CPNE1Q99829 537 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 LRRC1Q9BTT6 524 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 TGIF2Q9GZN2 237 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 SPNS1Q9H2V7 528 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 POPDC3Q9HBV1 291 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 CTNNAL1Q9UBT7 734 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 OARD1Q9Y530 152 aa17.43■□□□□ 0.38
CLN3-202ENST00000355477 PHGDHO43175 533 aaKnown RBP17.42■□□□□ 0.38
CLN3-202ENST00000355477 OR1F1O43749 312 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 JRKO75564 520 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 FAM155BO75949 473 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 URI1O94763 535 aaPredicted RBP17.42■□□□□ 0.38
CLN3-202ENST00000355477 GSTA2P09210 222 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 ACPPP15309 386 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 IL1RNP18510 177 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 GRK3P35626 688 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 AVPR1BP47901 424 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 SLC12A2P55011 1212 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 USP10Q14694 798 aaKnown RBP17.42■□□□□ 0.38
CLN3-202ENST00000355477 PLEKHN1Q494U1 663 aaPredicted RBP17.42■□□□□ 0.38
CLN3-202ENST00000355477 FAAH2Q6GMR7 532 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 IGFL3Q6UXB1 125 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 THOC6Q86W42 341 aaKnown RBP17.42■□□□□ 0.38
CLN3-202ENST00000355477 ZCCHC10Q8TBK6 192 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 SLC5A11Q8WWX8 675 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 GPR22Q99680 433 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 SARGQ9BW04 601 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 PHACTR1Q9C0D0 580 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 C14orf105Q9NVL8 296 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 SLC22A14Q9Y267 594 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 ESPL1Q14674 2120 aa17.42■□□□□ 0.38
CLN3-202ENST00000355477 CTAGE15A4D2H0 777 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms