RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SNTB2Q13425 540 aaKnown RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TEX44Q53QW1 395 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ATG9BQ674R7 924 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 COMTD1Q86VU5 262 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 RALGPS2Q86X27 583 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 OR4C15Q8NGM1 316 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TRAV6A0A075B6T7 132 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 PRKCGP05129 697 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 THP07101 528 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 PPP3CBP16298 524 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 HLA-FP30511 346 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 HECTD2Q5U5R9 776 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TCEANCQ8N8B7 351 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF565Q8N9K5 539 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TCEAL2Q9H3H9 227 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 PRDM12Q9H4Q4 367 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 GTPBP1O00178 669 aaKnown RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 LATO43561 262 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 KLRC4O43908 158 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 GSTM4Q03013 218 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 KEAP1Q14145 624 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 MEF2DQ14814 521 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TMEM200AQ86VY9 491 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CRYBG2Q8N1P7 616 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 SLC19A3Q9BZV2 496 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 NARFQ9UHQ1 456 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 NKRFO15226 690 aaKnown RBP eCLIP12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF20P17024 532 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ARL3P36405 182 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 CAMLGP49069 296 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 FNTBP49356 437 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 PRPF38BQ5VTL8 546 aaKnown RBP12.27□□□□□ -0.44
COL6A3-203ENST00000353578 FAM83HQ6ZRV2 1179 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-203ENST00000353578 MOB1BQ7L9L4 216 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ADAMTS15Q8TE58 950 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 COLEC11Q9BWP8 271 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ABHD14A-ACY1A0A1B0GW23 586 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 OR6C6A6NF89 314 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 GSK3BP49841 420 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 CDH15P55291 814 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ERVK-25P63136 954 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF33AQ06730 810 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 TCEAL1Q15170 157 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 C17orf64Q86WR6 236 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 STK35Q8TDR2 534 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 ELP4Q96EB1 424 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 CYP8B1Q9UNU6 501 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 POMT1Q9Y6A1 747 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 PTCH2Q9Y6C5 1203 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 MINDY1Q8N5J2 469 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 C7orf57Q8NEG2 295 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 CHAC2Q8WUX2 184 aa12.27□□□□□ -0.44
COL6A3-203ENST00000353578 MEIOCA2RUB1 952 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SMLR1H3BR10 107 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 OR10H2O60403 315 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF34Q8IZ26 560 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 KLHL9Q9P2J3 617 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 GPR182O15218 404 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 MSX2P35548 267 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-203ENST00000353578 TMEM41BQ5BJD5 291 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 FIP1L1Q6UN15 594 aaKnown RBP12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SMPDL3AQ92484 453 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 GLOD4Q9HC38 313 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SH2B3Q9UQQ2 575 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 DLGAP4Q9Y2H0 992 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 VILLO15195 856 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SCGB2A1O75556 95 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 STT3AP46977 705 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 KCNJ8Q15842 424 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 Q6ZNX1 250 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 OR8J1Q8NGP2 316 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 PIWIL1Q96J94 861 aaKnown RBP12.27□□□□□ -0.45
COL6A3-203ENST00000353578 OR10A4Q9H209 315 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 RPS10P5Q9NQ39 176 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 TUBG2Q9NRH3 451 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 LRFN1Q9P244 771 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 ABCC6O95255 1503 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SLC1A7O00341 560 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 TLR5O60602 858 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 TFPTP0C1Z6 253 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 HSD17B1P14061 328 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 TGM4P49221 684 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 CRY2Q49AN0 593 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 FCRL1Q96LA6 429 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 ZFR2Q9UPR6 939 aaKnown RBP12.27□□□□□ -0.45
COL6A3-203ENST00000353578 CNTNAP2Q9UHC6 1331 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 VARSP26640 1264 aaKnown RBP12.27□□□□□ -0.45
COL6A3-203ENST00000353578 IGFALSP35858 605 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 GRM2Q14416 872 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SCGB2B2Q4G0G5 96 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 TIGD3Q6B0B8 471 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 LCN8Q6JVE9 175 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 FTMTQ8N4E7 242 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 OR56B4Q8NH76 319 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 SLIT3O75094 1523 aa12.27□□□□□ -0.45
COL6A3-203ENST00000353578 F5H5P2 479 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ATG13O75143 517 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 BCKDHAP12694 445 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF616Q08AN1 781 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 RAPSNQ13702 412 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms