RNA–Protein interactions for RNA: ENST00000344824.10

TPM4-202, Transcript of tropomyosin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TPM4, Length 1,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-202ENST00000344824 TMCO1Q9UM00 188 aa13.23□□□□□ -0.29
TPM4-202ENST00000344824 ASB1Q9Y576 335 aa13.23□□□□□ -0.29
TPM4-202ENST00000344824 ATXN7O15265 892 aaPredicted RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 TAPBPO15533 448 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 KLK8O60259 260 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 LYPLA1O75608 230 aaPredicted RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 SUPT7LO94864 414 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 SERPINE1P05121 402 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 VIMP08670 466 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 TCN2P20062 427 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 IMPDH1P20839 514 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 GDF5P43026 501 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 AP1S2P56377 157 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 DNAJB13P59910 316 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 HERVK_113P63132 956 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 CDKL1Q00532 357 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 NFKB2Q00653 900 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 BST1Q10588 318 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 DNASE1L3Q13609 305 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 FASTKQ14296 549 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 UNC50Q53HI1 259 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 ZNF678Q5SXM1 525 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 ATP1A1-AS1Q5TC04 95 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 ATG16L1Q676U5 607 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 FAM47EQ6ZV65 393 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 FLVCR1-AS1Q8TAF5 88 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 PYCR2Q96C36 320 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 FBXL8Q96CD0 374 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 MED8Q96G25 268 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 TCTN2Q96GX1 697 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 SLC45A3Q96JT2 553 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 CCDC138Q96M89 665 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 NSUN5Q96P11 429 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 ERVK-6Q9BXR3 956 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 SHCBP1LQ9BZQ2 653 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 RABEP2Q9H5N1 569 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 INTS7Q9NVH2 962 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 STOX2Q9P2F5 926 aaPredicted RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 PTBP2Q9UKA9 531 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 PADI1Q9ULC6 663 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 STX16-NPEPL1H3BU86 382 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 MYO1CO00159 1063 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 STX16O14662 325 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 NKX2-8O15522 239 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 ITM2AO43736 263 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 H2AFYO75367 372 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 OR2B3O76000 313 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 SLC16A8O95907 504 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 F8A1P23610 371 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 IMPA1P29218 277 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 LSP1P33241 339 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 CDH13P55290 713 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 RPS18P62269 152 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 CDC20Q12834 499 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 NAE1Q13564 534 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 PTCHD3Q3KNS1 767 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 THEMIS2Q5TEJ8 643 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 AGTRAPQ6RW13 159 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 SUSD1Q6UWL2 747 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 SYTL1Q8IYJ3 562 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 TCAIMQ8N3R3 496 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 FBXO15Q8NCQ5 510 aaPredicted RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 SNRNP27Q8WVK2 155 aaKnown RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 TTC9Q92623 222 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 L3HYPDHQ96EM0 354 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 FCRL4Q96PJ5 515 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 AKIRIN1Q9H9L7 192 aaPredicted RBP13.22□□□□□ -0.29
TPM4-202ENST00000344824 SLCO1B3Q9NPD5 702 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 ANGPTL3Q9Y5C1 460 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 PCDHB3Q9Y5E6 796 aa13.22□□□□□ -0.29
TPM4-202ENST00000344824 CDC14CA4D256 554 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 ZNF749O43361 778 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 HCRTR1O43613 425 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 WDR47O94967 919 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 HSPA4LO95757 839 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 KLK3P07288 261 aaPredicted RBP13.21□□□□□ -0.3
TPM4-202ENST00000344824 CHRNGP07510 517 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 RPS17P08708 135 aaKnown RBP13.21□□□□□ -0.3
TPM4-202ENST00000344824 ARL1P40616 181 aaPredicted RBP13.21□□□□□ -0.3
TPM4-202ENST00000344824 GRIA3P42263 894 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 SLC1A6P48664 564 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 SEC24CP53992 1094 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 PNLIPRP1P54315 467 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 ABCE1P61221 599 aaKnown RBP13.21□□□□□ -0.3
TPM4-202ENST00000344824 SF3A3Q12874 501 aaKnown RBP eCLIP13.21□□□□□ -0.31e-6■■■■■ 41.8
TPM4-202ENST00000344824 RCN2Q14257 317 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 ERV3-1Q14264 604 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 RBBP7Q16576 425 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 C1orf189Q5VU69 101 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 FIGLAQ6QHK4 219 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 TEX9Q8N6V9 391 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 ZNF655Q8N720 491 aaPredicted RBP13.21□□□□□ -0.3
TPM4-202ENST00000344824 SNX31Q8N9S9 440 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 RAB3IL1Q8TBN0 382 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 AGR3Q8TD06 166 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 TRPC4APQ8TEL6 797 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 ZNF480Q8WV37 535 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 ATL1Q8WXF7 558 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 CD244Q9BZW8 370 aa13.21□□□□□ -0.3
TPM4-202ENST00000344824 SPRTNQ9H040 489 aaPredicted RBP13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms