RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PIRO00625 290 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PIP5K1BO14986 540 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 HCRTR2O43614 444 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 BCAS2O75934 225 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 AP2A1O95782 977 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GABRA1P14867 456 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ASMTP46597 345 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CACNA2D1P54289 1103 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CD47Q08722 323 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 BNIP3Q12983 259 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 B3GNTL1Q67FW5 361 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CDCA2Q69YH5 1023 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 FRMD7Q6ZUT3 714 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 KMT5CQ86Y97 462 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SIRT6Q8N6T7 355 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF540Q8NDQ6 660 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 OR1J2Q8NGS2 313 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SPRYD4Q8WW59 207 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 XAGE5Q8WWM1 108 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZUFSPQ96AP4 578 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 BMFQ96LC9 184 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GPR87Q9BY21 358 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CWH43Q9H720 699 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM9Q9P0T7 183 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 LRFN1Q9P244 771 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 LOC105369274A0A096LPK9 316 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 A0A0G2JN53 185 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 RARAP10276 462 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PSMB4P28070 264 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SLCO1A2P46721 670 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SMIM11AP58511 58 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CCL7P80098 99 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 C2orf80Q0P641 193 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TEX44Q53QW1 395 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TXNDC11Q6PKC3 985 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 OR4N4Q8N0Y3 316 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PDPRQ8NCN5 879 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 OR9A1PQ8NGU1 263 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PHF21BQ96EK2 531 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 KCNK17Q96T54 332 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PAAF1Q9BRP4 392 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 DPH7Q9BTV6 452 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM121BQ9BXQ6 578 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 MEAF6Q9HAF1 191 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TMBIM4Q9HC24 238 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 C1GALT1Q9NS00 363 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GMNCA6NCL1 334 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CTDNEP1O95476 244 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PGAM1P18669 254 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 IL10P22301 178 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SLC19A1P41440 591 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ERVPABLB-1P60509 514 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 JAG1P78504 1218 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CHAF1BQ13112 559 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 NAB2Q15742 525 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SLC22A10Q63ZE4 541 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF548Q8NEK5 533 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZBED6CLQ96FA7 236 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ESRP2Q9H6T0 727 aaKnown RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TAS2R9Q9NYW1 312 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 FAM166BA8MTA8 275 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TPP1O14773 563 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GNB5O14775 395 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 UGT1A9O60656 530 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 SOX30O94993 753 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 NR2F6P10588 404 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GABRG2P18507 467 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 UGT1A4P22310 534 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CXCR5P32302 372 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 UGT1A3P35503 534 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PCK1P35558 622 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 IRAK1P51617 712 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 AP1S2P56377 157 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PTSQ03393 145 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 LRIF1Q5T3J3 769 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 PMF1Q6P1K2 205 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ARHGAP11AQ6P4F7 1023 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZER1Q7Z7L7 766 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 OSTM1Q86WC4 334 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GALNT12Q8IXK2 581 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 GALNT16Q8N428 558 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF808Q8N4W9 903 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-203ENST00000341423 C3orf56Q8N813 242 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM105Q8N8V8 129 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF610Q8N9Z0 462 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 NRSN2Q9GZP1 204 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 UGT1A7Q9HAW7 530 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 UGT1A10Q9HAW8 530 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 UGT1A8Q9HAW9 530 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 CORO2BQ9UQ03 480 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 WIF1Q9Y5W5 379 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 ADGRB1O14514 1584 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 K7EQS6 105 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 FFAR3O14843 346 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 GPR42O15529 346 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CSTF3Q12996 717 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 EIF2S3LQ2VIR3 472 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 MROH9Q5TGP6 573 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 RANBP3LQ86VV4 465 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 LGI4Q8N135 537 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms