RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 MC2RQ01718 297 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 GGTA1PQ4G0N0 100 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 C3orf38Q5JPI3 329 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 MED27Q6P2C8 311 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 DGLUCYQ7Z3D6 616 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 MFSD9Q8NBP5 474 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 DYDC1Q8WWB3 177 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 THAP11Q96EK4 314 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 NT5DC2Q9H857 520 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 MANSC1Q9H8J5 431 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 TNFRSF12AQ9NP84 129 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 FBXO8Q9NRD0 319 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 SATB2Q9UPW6 733 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 SNRNP200O75643 2136 aaKnown RBP21.2■□□□□ 0.98
SDC3-202ENST00000339394 H0YIV9 168 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 ITM2AO43736 263 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 BST1Q10588 318 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 STX3Q13277 289 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 FAM219BQ5XKK7 198 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 FOXR1Q6PIV2 292 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 VN1R4Q7Z5H5 301 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 CUZD1Q86UP6 607 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 LAS2Q8IYD9 372 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 CDYL2Q8N8U2 506 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 OR7G3Q8NG95 312 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 RAB3IL1Q8TBN0 382 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 UBE2E3Q969T4 207 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 RERGQ96A58 199 aaPredicted RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 MAGEB10Q96LZ2 347 aaPredicted RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 C20orf27Q9GZN8 174 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 ZNF395Q9H8N7 513 aaPredicted RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 FANCEQ9HB96 536 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 EML4Q9HC35 981 aaKnown RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 APMAPQ9HDC9 416 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 TRPS1Q9UHF7 1281 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 ZFP69BQ9UJL9 534 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 PCDHGA11Q9Y5H2 935 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 TMEM114B3SHH9 223 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 POLR1CO15160 346 aaPredicted RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 EIF2S1P05198 315 aaKnown RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 CAPN1P07384 714 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 AHRP35869 848 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 ETV5P41161 510 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 SLC1A6P48664 564 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 VSX2P58304 361 aaPredicted RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 ABCE1P61221 599 aaKnown RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 IL11RAQ14626 422 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 ZRSR2Q15696 482 aaKnown RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 ADNP2Q6IQ32 1131 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 TRIM42Q8IWZ5 723 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.19■□□□□ 0.98
SDC3-202ENST00000339394 OR1L3Q8NH93 324 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 ZNF75CPQ92670 426 aaPredicted RBP21.19■□□□□ 0.98
SDC3-202ENST00000339394 ZNF285Q96NJ3 590 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 CTRCQ99895 268 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 SLC39A1Q9NY26 324 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 PISDQ9UG56 409 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 SERTAD3Q9UJW9 196 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 AP1M2Q9Y6Q5 423 aa21.19■□□□□ 0.98
SDC3-202ENST00000339394 KNTC1P50748 2209 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 H3BMH7 237 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 FFAR3O14843 346 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 GPR42O15529 346 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 LYPLA1O75608 230 aaPredicted RBP21.18■□□□□ 0.98
SDC3-202ENST00000339394 FOXA1P55317 472 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 WASHC2DQ5SRD0 308 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 ATG16L1Q676U5 607 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 TTLQ8NG68 377 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 FAM76AQ8TAV0 307 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 METTL6Q8TCB7 284 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 SLC13A3Q8WWT9 602 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 TM4SF19Q96DZ7 209 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 KCNA7Q96RP8 456 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 MACROD1Q9BQ69 325 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 SPRTNQ9H040 489 aaPredicted RBP21.18■□□□□ 0.98
SDC3-202ENST00000339394 RHBGQ9H310 441 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 STARD5Q9NSY2 213 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 RARRES3Q9UL19 164 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 WASF3Q9UPY6 502 aa21.18■□□□□ 0.98
SDC3-202ENST00000339394 SPTBN2O15020 2390 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 OR2B3O76000 313 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 HSPA4LO95757 839 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 STATHP02808 62 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 PCNAP12004 261 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 FGF5P12034 268 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 MAPK10P53779 464 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 ITGA1P56199 1179 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 CYP4F2P78329 520 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 TCTE1Q5JU00 501 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 CYB5D1Q6P9G0 228 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 VN1R5Q7Z5H4 357 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 ASPGQ86U10 573 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 BPHLQ86WA6 291 aaPredicted RBP21.17■□□□□ 0.98
SDC3-202ENST00000339394 PPP1R3BQ86XI6 285 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 CSNK1A1LQ8N752 337 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 WDR20Q8TBZ3 569 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 PMEPA1Q969W9 287 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 IRAK4Q9NWZ3 460 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 KLK13Q9UKR3 277 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 TIMM22Q9Y584 194 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms