RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MSLNLQ96KJ4 702 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ORAI3Q9BRQ5 295 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 MAGEE1Q9HCI5 957 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 PTTG2Q9NZH5 202 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 KCNS2Q9ULS6 477 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CDC14AQ9UNH5 594 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 SAGE2PA6NJ88 616 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CAPN14A8MX76 684 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 HCRTO43612 131 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 APOL3O95236 402 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ZNF41P51814 821 aaPredicted RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 CRHR2Q13324 411 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 THOC6Q86W42 341 aaKnown RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 OXR1Q8N573 874 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ROPN1LQ96C74 230 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 RAB11FIP5Q9BXF6 653 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 BTBD1Q9H0C5 482 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 KAT8Q9H7Z6 458 aaKnown RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 NUAK1O60285 661 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CCND3P30281 292 aaPredicted RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 WSCD2Q2TBF2 565 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CMTM8Q8IZV2 173 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 EHD1Q9H4M9 534 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 TNFRSF10DQ9UBN6 386 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 TCRBV7S3A2A0A539 114 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ZNF860A6NHJ4 632 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CLIC1O00299 241 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 RNF13O43567 381 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 EOMESO95936 686 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ATP1B2P14415 290 aaPredicted RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 HOXB2P14652 356 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CLRN1P58418 232 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 SOWAHAQ2M3V2 549 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 PRRT3Q5FWE3 981 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 NKAPLQ5M9Q1 402 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ZNF648Q5T619 568 aaPredicted RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 CCDC28AQ8IWP9 274 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 DTX3Q8N9I9 347 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 STRA6Q9BX79 667 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 ZDHHC3Q9NYG2 299 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 AASSQ9UDR5 926 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 RPL36Q9Y3U8 105 aaKnown RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 RIMBP3CA6NJZ7 1639 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 RIMBP3BA6NNM3 1639 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 RIMBP3Q9UFD9 1639 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 TEX13DA0A0J9YY54 714 aaPredicted RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 FAM170BA6NMN3 283 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 FHP07954 510 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 CREB1P16220 341 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 OR2B6P58173 313 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 HNRNPDQ14103 355 aaKnown RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 TSTQ16762 297 aaKnown RBP12.28□□□□□ -0.44
SDC3-201ENST00000336798 PAQR7Q86WK9 346 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 PXYLP1Q8TE99 480 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 MR1Q95460 341 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 MED11Q9P086 117 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 TLR6Q9Y2C9 796 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 YIPF1Q9Y548 306 aa12.28□□□□□ -0.44
SDC3-201ENST00000336798 VSTM5A8MXK1 200 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 SSX5O60225 188 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 POLR2CP19387 275 aaPredicted RBP12.27□□□□□ -0.44
SDC3-201ENST00000336798 GATMP50440 423 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 TLE2Q04725 743 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 RAB12Q6IQ22 244 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 LBX2Q6XYB7 198 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 CASTOR1Q8WTX7 329 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 TMEM125Q96AQ2 219 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 SLC22A18Q96BI1 424 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 PAK6Q9NQU5 681 aaPredicted RBP12.27□□□□□ -0.44
SDC3-201ENST00000336798 GRHPRQ9UBQ7 328 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 ABCG2Q9UNQ0 655 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 SOX1O00570 391 aaPredicted RBP12.27□□□□□ -0.44
SDC3-201ENST00000336798 NPHS1O60500 1241 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 POP7O75817 140 aaKnown RBP12.27□□□□□ -0.44
SDC3-201ENST00000336798 PLATP00750 562 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 IFNA21P01568 189 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 MFSD2AQ8NA29 543 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 MRIQ9BWK5 157 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 OR8D2Q9GZM6 311 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 OR51B5Q9H339 312 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 IL21RQ9HBE5 538 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 HCN2Q9UL51 889 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 ALG5Q9Y673 324 aa12.27□□□□□ -0.44
SDC3-201ENST00000336798 ADAMTS13Q76LX8 1427 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 TRBC2A0A5B9 178 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 CHRNB2P17787 502 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.27□□□□□ -0.45
SDC3-201ENST00000336798 CLEC20AQ6ZU45 233 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 CCDC86Q9H6F5 360 aaKnown RBP12.27□□□□□ -0.45
SDC3-201ENST00000336798 METTL21EPA6NDL7 271 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 RPS13P62277 151 aaKnown RBP12.27□□□□□ -0.45
SDC3-201ENST00000336798 HERVK_113P63132 956 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 CEACAM20Q6UY09 585 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 TOMM5Q8N4H5 51 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 CAMKVQ8NCB2 501 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 RIT1Q92963 219 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 ERVK-6Q9BXR3 956 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 EBF2Q9HAK2 575 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 SMURF2Q9HAU4 748 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 DNAJB9Q9UBS3 223 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms