RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FERD3LQ96RJ6 166 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 RCCD1A6NED2 376 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF878C9JN71 531 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 IDSP22304 550 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 VEGFCP49767 419 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MBOAT1Q6ZNC8 495 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 GDPGP1Q6ZNW5 385 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 HS3ST5Q8IZT8 346 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 AQP11Q8NBQ7 271 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 DENND1AQ8TEH3 1009 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 SCRN2Q96FV2 425 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ZBED3Q96IU2 234 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MGAT4BQ9UQ53 548 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MATN3O15232 486 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ADRA1BP35368 520 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ABHD18Q0P651 414 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 PUM1Q14671 1186 aaKnown RBP eCLIP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF169Q14929 603 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ARL6IP1Q15041 203 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 GALNT13Q8IUC8 556 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MAPK15Q8TD08 544 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 SECISBP2Q96T21 854 aaKnown RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF649Q9BS31 505 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 TMEM14AQ9Y6G1 99 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 SALL3Q9BXA9 1300 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 UQCRC1P31930 480 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 GAS6Q14393 721 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ATAT1Q5SQI0 421 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ALG1LQ6GMV1 187 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 REEP3Q6NUK4 255 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 TMPRSS4Q9NRS4 437 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 TEX51A0A1B0GUA7 166 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 TSPAN15O95858 294 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MTPNP58546 118 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 CHIT1Q13231 466 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 OR14A2Q96R54 314 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 IL25Q9H293 177 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 RPF2Q9H7B2 306 aaKnown RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 GPN2Q9H9Y4 310 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 SH2B3Q9UQQ2 575 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 CYP2B6P20813 491 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MRPS6P82932 125 aaKnown RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 FAM117BQ6P1L5 589 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ARL9Q6T311 187 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 FN3KQ9H479 309 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 SMPD4Q9NXE4 827 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 LAMP5Q9UJQ1 280 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 FAM230AA0A1W2PPH8 454 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 TUBG1P23258 451 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 EDNRAP25101 427 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF33AQ06730 810 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 C9orf57Q5W0N0 161 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 MARCH9Q86YJ5 346 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 SSX3Q99909 188 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 ARL6Q9H0F7 186 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 B3GNT3Q9Y2A9 372 aa13.9□□□□□ -0.19
COL7A1-201ENST00000328333 PMM2O15305 246 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 LRCH4O75427 683 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 NDUFS1P28331 727 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 CRISP1P54107 249 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 OR12D2P58182 307 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 TMEM185BQ9H7F4 350 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 IL17RBQ9NRM6 502 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 ARMC1Q9NVT9 282 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 VPS29Q9UBQ0 182 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 PCYT1BQ9Y5K3 369 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 RAI2Q9Y5P3 530 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 TP73O15350 636 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 OIP5O43482 229 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 SSX5O60225 188 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 CDRT1O95170 752 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 SNTA1Q13424 505 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 LASP1Q14847 261 aaKnown RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 RAB39AQ14964 217 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 CHRFAM7AQ494W8 412 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 UGT2A3Q6UWM9 527 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 HAPLN3Q96S86 360 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 ST6GALNAC4Q9H4F1 302 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 RETREG1Q9H6L5 497 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 DOPEY2Q9Y3R5 2298 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 C17orf113A0A1B0GUU1 675 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 OXSR1O95747 527 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 COQ5Q5HYK3 327 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 RALGAPA1Q6GYQ0 2036 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 C9IYK1 514 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 SULT1B1O43704 296 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 CCND3P30281 292 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 GJA9P57773 515 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 PAOXQ6QHF9 649 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 ZMIZ2Q8NF64 920 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 KCNC2Q96PR1 638 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 IL4I1Q96RQ9 567 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 OR51E2Q9H255 320 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 ABCC6O95255 1503 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 MAFO75444 373 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 IL32P24001 234 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 TRIM23P36406 574 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 ETV6P41212 452 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 C1QTNF8P60827 252 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 FGL2Q14314 439 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms