RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 CENPBD1B2RD01 187 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 ASGR1P07306 291 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 IRF1P10914 325 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 PRPS1L1P21108 318 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 RRM2P31350 389 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 S100A5P33763 92 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 NUDT6P53370 316 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 LIMK1P53667 647 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 BOP1Q14137 746 aaKnown RBP12.99□□□□□ -0.33
SKA3-202ENST00000314759 BCL7AQ4VC05 210 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 INO80DQ53TQ3 878 aaPredicted RBP12.99□□□□□ -0.33
SKA3-202ENST00000314759 SNAP47Q5SQN1 464 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 MLIPQ5VWP3 458 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 NEK5Q6P3R8 708 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 SLC24A5Q71RS6 500 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 MYDGFQ969H8 173 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 FEVQ99581 238 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 HTATIP2Q9BUP3 242 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 ERVK13-1Q9NX77 482 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 GPR83Q9NYM4 423 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 SPASTQ9UBP0 616 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 GLYATL1P3A0A0U1RQE8 302 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 TMEM229AB2RXF0 380 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 STSP08842 583 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 GGT2P36268 569 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 MRPS15P82914 257 aaKnown RBP12.99□□□□□ -0.33
SKA3-202ENST00000314759 GGTA1PQ4G0N0 100 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 TSEN54Q7Z6J9 526 aaKnown RBP12.99□□□□□ -0.33
SKA3-202ENST00000314759 ZSWIM9Q86XI8 627 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 SYNPOQ8N3V7 929 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 RUBCNLQ9H714 662 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 RAD18Q9NS91 495 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 KRT87PA6NCN2 255 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 DPM1O60762 260 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 PTHP01270 115 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 AQP1P29972 269 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 GKP32189 559 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 ZXDBP98169 803 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 ABRQ12979 859 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 CDKN3Q16667 212 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 SYT12Q8IV01 421 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 UBQLNLQ8IYU4 475 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 CPA6Q8N4T0 437 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 MAL2Q969L2 176 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 TMEM246Q9BRR3 403 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 TTYH2Q9BSA4 534 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 TTLL2Q9BWV7 592 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 NUAK2Q9H093 628 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 CCDC59Q9P031 241 aaKnown RBP12.99□□□□□ -0.33
SKA3-202ENST00000314759 PCDHGB3Q9Y5G1 929 aa12.99□□□□□ -0.33
SKA3-202ENST00000314759 ZNF840PA6NDX5 716 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 GFRA2O00451 464 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 SEMA3DO95025 777 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 ADORA3P0DMS8 318 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 HNF1BP35680 557 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 SRSF11Q05519 484 aaKnown RBP12.98□□□□□ -0.33
SKA3-202ENST00000314759 VEZF1Q14119 521 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 TRIM71Q2Q1W2 868 aaKnown RBP12.98□□□□□ -0.33
SKA3-202ENST00000314759 PTCHD3Q3KNS1 767 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 RTP2Q5QGT7 225 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 FRG2Q64ET8 278 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 NRARPQ7Z6K4 114 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 NXPE1Q8N323 547 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 TCAIMQ8N3R3 496 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 L3MBTL4Q8NA19 623 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 ST6GAL2Q96JF0 529 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 FRG2BQ96QU4 278 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 CHCHD6Q9BRQ6 235 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 TPT1P8Q9HAU6 139 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 BTBD3Q9Y2F9 522 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 MN1Q10571 1320 aaPredicted RBP12.98□□□□□ -0.33
SKA3-202ENST00000314759 NPIPB8E9PQR5 432 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 AGRPO00253 132 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 CTDSP2O14595 271 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 TRBC1P01850 177 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 COX7A2P14406 83 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 CCR7P32248 378 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 IDH2P48735 452 aaKnown RBP12.98□□□□□ -0.33
SKA3-202ENST00000314759 RGS6P49758 472 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 CYP4F2P78329 520 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 ARMCX4Q5H9R4 360 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 HECTD3Q5T447 861 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 UBE2R2Q712K3 238 aaPredicted RBP12.98□□□□□ -0.33
SKA3-202ENST00000314759 LRRC70Q7Z2Q7 622 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 HOMEZQ8IX15 550 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 SLC5A8Q8N695 610 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 KBTBD8Q8NFY9 601 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 CSGALNACT1Q8TDX6 532 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 SNX18Q96RF0 628 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 CCDC177Q9NQR7 707 aaPredicted RBP12.98□□□□□ -0.33
SKA3-202ENST00000314759 RLIMQ9NVW2 624 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 KCTD5Q9NXV2 234 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 SLC22A14Q9Y267 594 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 LYVE1Q9Y5Y7 322 aa12.98□□□□□ -0.33
SKA3-202ENST00000314759 H3BQ06 376 aaPredicted RBP12.97□□□□□ -0.33
SKA3-202ENST00000314759 SUV39H1O43463 412 aa12.97□□□□□ -0.33
SKA3-202ENST00000314759 CA12O43570 354 aa12.97□□□□□ -0.33
SKA3-202ENST00000314759 MED26O95402 600 aa12.97□□□□□ -0.33
SKA3-202ENST00000314759 LAMP1P11279 417 aa12.97□□□□□ -0.33
SKA3-202ENST00000314759 AOAHP28039 575 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms