RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 OXA1LQ15070 435 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PPP1R3AQ16821 1122 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ARMC12Q5T9G4 340 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 METTL11BQ5VVY1 283 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 KIAA1324Q6UXG2 1013 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 S100A7AQ86SG5 101 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SERPINA11Q86U17 422 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 OR7G3Q8NG95 312 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 OR13F1Q8NGS4 319 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 COQ8AQ8NI60 647 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SLC2A12Q8TD20 617 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ACDQ96AP0 544 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 TUT1Q9H6E5 874 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RNF121Q9H920 327 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 IL17RBQ9NRM6 502 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 FLRT1Q9NZU1 646 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GMPR2Q9P2T1 348 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SARDHQ9UL12 918 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 EDARQ9UNE0 448 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PRSS51A0A1B0GVH4 220 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SYN3O14994 580 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 VILLO15195 856 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CPNE6O95741 557 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ECI1P42126 302 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PITPNBP48739 271 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PRMT2P55345 433 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 KIAA0319Q5VV43 1072 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RAP1GAP2Q684P5 730 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CDC42EP5Q6NZY7 148 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 AMIGO2Q86SJ2 522 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ZSWIM9Q86XI8 627 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GHDCQ8N2G8 530 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 TWIST2Q8WVJ9 160 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 OSTF1Q92882 214 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RPF2Q9H7B2 306 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GPRC5BQ9NZH0 403 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PTGFRNQ9P2B2 879 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MSRAQ9UJ68 235 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SPTA1P02549 2419 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PLCH1Q4KWH8 1693 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 MEIS2O14770 477 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 BANF1O75531 89 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 DLSTP36957 453 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 MAPK12P53778 367 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 SH3D19Q5HYK7 790 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 EXOSC6Q5RKV6 272 aaKnown RBP5.1□□□□□ -1.59
SCN1A-201ENST00000303395 DCST1Q5T197 706 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 IL27RAQ6UWB1 636 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 SLC25A41Q8N5S1 370 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 BBS10Q8TAM1 723 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 AZIN2Q96A70 460 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ARMC5Q96C12 935 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 GABARAPL1Q9H0R8 117 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 KCNK13Q9HB14 408 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 BIN3Q9NQY0 253 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 C19orf12Q9NSK7 152 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 TAS2R9Q9NYW1 312 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 TRAPPC4Q9Y296 219 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 SLC45A1Q9Y2W3 748 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 NPFFR2Q9Y5X5 522 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 TRPM6Q9BX84 2022 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 KIF13BQ9NQT8 1826 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 CDHR4A6H8M9 788 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 FABP12A6NFH5 140 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 NT5C1B-RDH14C9J2C7 533 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 CASC3O15234 703 aaKnown RBP5.1□□□□□ -1.59
SCN1A-201ENST00000303395 P2RX6O15547 441 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 GABARAPO95166 117 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ATE1O95260 518 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 DGKGP49619 791 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 GALK2Q01415 458 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 FSTL4Q6MZW2 842 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 NIPAL3Q6P499 406 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 KCNIP4Q6PIL6 250 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 FAM198BQ6UWH4 519 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 SEPT12Q8IYM1 358 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 OR56A1Q8NGH5 318 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 RPLP0P6Q8NHW5 317 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ZBED6CLQ96FA7 236 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-201ENST00000303395 GLT1D1Q96MS3 346 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 COG8Q96MW5 612 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 OR52E6Q96RD3 313 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 PBDC1Q9BVG4 233 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 FNDC11Q9BVV2 318 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 GPATCH2Q9NW75 528 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 Q9Y3F1 56 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 PCDHB5Q9Y5E4 795 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 PCDHGA5Q9Y5G8 931 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 PCDHGA2Q9Y5H1 932 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 HEBP2Q9Y5Z4 205 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 SCN2AQ99250 2005 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 MAGEB17A8MXT2 336 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 TNFRSF10BO14763 440 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ANGPTL7O43827 346 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 NSG1P42857 185 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 LAMTOR4Q0VGL1 99 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ECH1Q13011 328 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 RIN1Q13671 783 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 SMAD1Q15797 465 aaKnown RBP5.1□□□□□ -1.59
SCN1A-201ENST00000303395 PFKFB4Q16877 469 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms