RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DNAJB11Q9UBS4 358 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 KCNS2Q9ULS6 477 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 ISPDA4D126 451 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 OR2B3O76000 313 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 PFKMP08237 780 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 TPSB2P20231 275 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 ARG2P78540 354 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 TPSAB1Q15661 275 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 SH3D19Q5HYK7 790 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 DUS1LQ6P1R4 473 aaKnown RBP7.57□□□□□ -1.2
SCN9A-201ENST00000303354 FOXR2Q6PJQ5 311 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 CEACAM20Q6UY09 585 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 ASB18Q6ZVZ8 466 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 USP30Q70CQ3 517 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 SYVN1Q86TM6 617 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 TMEM74Q96NL1 305 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 HAPLN3Q96S86 360 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 CTRCQ99895 268 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 DEFB126Q9BYW3 111 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF226Q9NYT6 803 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 CAPN8A6NHC0 703 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 VSTM5A8MXK1 200 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 H3BNC9 293 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 SFTPDP35247 375 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 MTTPP55157 894 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 SLAMF1Q13291 335 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 OR2L8Q8NGY9 312 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 STK32AQ8WU08 396 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 FOXN4Q96NZ1 517 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 C16orf70Q9BSU1 422 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 SOX17Q9H6I2 414 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-201ENST00000303354 ACSS3Q9H6R3 686 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 SNX7Q9UNH6 387 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 AP4B1Q9Y6B7 739 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 KIAA1210Q9ULL0 1709 aa7.57□□□□□ -1.2
SCN9A-201ENST00000303354 AHSGP02765 367 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 OR12D1P0DN82 309 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 AK4P27144 223 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ALDH3A2P51648 485 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ZFP1Q6P2D0 407 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 IRF2BP1Q8IU81 584 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SMARCD2Q92925 531 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 HLA-CQ95604 372 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 BORCS8Q96FH0 119 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CMTM7Q96FZ5 175 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 USB1Q9BQ65 265 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 FOXQ1Q9C009 403 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 UCKL1Q9NWZ5 548 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 C5AR2Q9P296 337 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ZDHHC2Q9UIJ5 367 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PTGDR2Q9Y5Y4 395 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CHRM1P11229 460 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 XRCC1P18887 633 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ARL3P36405 182 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 RAB28P51157 221 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ZXDBP98169 803 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 GPR17Q13304 367 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 DECR1Q16698 335 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CRB2Q5IJ48 1285 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NCEH1Q6PIU2 408 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NUDT13Q86X67 352 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 OR14L1PQ8NHC6 308 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TSPAN18Q96SJ8 248 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TCF12Q99081 682 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PDE7BQ9NP56 450 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 GRHPRQ9UBQ7 328 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 MAPRE3Q9UPY8 281 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 BIRC5O15392 142 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CCNFP41002 786 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CCL11P51671 97 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PNLIPRP1P54315 467 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CTBP2P56545 445 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 FCHO2Q0JRZ9 810 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NFE2L1Q14494 772 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF765Q7L2R6 523 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 OR9A1PQ8NGU1 263 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 DIO2Q92813 273 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 DENND2DQ9H6A0 471 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 B3GAT2Q9NPZ5 323 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 FAM171A2A8MVW0 826 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 DUX1O43812 170 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ESR1P03372 595 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NDUFS1P28331 727 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SOX2P48431 317 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 EEF1A2Q05639 463 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PUDPQ08623 228 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SLCO6A1Q86UG4 719 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PHF12Q96QT6 1004 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 F2RL3Q96RI0 385 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CST11Q9H112 138 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SRA1Q9HD15 236 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 GRIP1Q9Y3R0 1128 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 C5orf51A6NDU8 294 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 F2P00734 622 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 RFC2P35250 354 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SIM1P81133 766 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CRTC2Q53ET0 693 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 IFI44LQ53G44 452 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TMPPEQ6ZT21 453 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms