RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KCNJ9Q92806 393 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TCEAL4Q96EI5 215 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SPACA7Q96KW9 195 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 C12orf65Q9H3J6 166 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 TBC1D17Q9HA65 648 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 THUMPD1Q9NXG2 353 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 CNOT2Q9NZN8 540 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 PLEKHA6Q9Y2H5 1048 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 GPR89AB7ZAQ6 455 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 GPR89BP0CG08 455 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PSMA1P25786 263 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 S100A3P33764 101 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 EVI2BP34910 448 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 GPR15P49685 360 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 RAB7AP51149 207 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 POU4F2Q12837 409 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 VEZF1Q14119 521 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ANXA8L1Q5VT79 327 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 BEND4Q6ZU67 534 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ZNF227Q86WZ6 799 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MAPK15Q8TD08 544 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TMEM203Q969S6 136 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 C3orf49Q96BT1 292 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 BIRC7Q96CA5 298 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 CXorf40BQ96DE9 158 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 FUBP3Q96I24 572 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS35-201ENST00000299138 GAREM1Q9H706 876 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 AKIP1Q9NQ31 210 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TLR6Q9Y2C9 796 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 A0A1B0GVC2 190 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 KRBA1A5PL33 1030 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 BHLHE40O14503 412 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ZNF7P17097 686 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 PTPRAP18433 802 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 EPORP19235 508 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 BIDP55957 195 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PPP1R26Q5T8A7 1209 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 PAOXQ6QHF9 649 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 KCTD9Q7L273 389 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ZNF627Q7L945 461 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 C11orf65Q8NCR3 313 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TMEM125Q96AQ2 219 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MED30Q96HR3 178 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SGIP1Q9BQI5 828 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS35-201ENST00000299138 C1orf109Q9NX04 203 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 KCNN3Q9UGI6 736 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 IKZF2Q9UKS7 526 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PSAT1Q9Y617 370 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 NRCAMQ92823 1304 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ACOX3O15254 700 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 REM1O75628 298 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC34A2O95436 690 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC2A2P11168 524 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 COX7A2P14406 83 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 DGKAP23743 735 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 HPCAL1P37235 193 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 GNPDA1P46926 289 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 IDH3GP51553 393 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 CDH11P55287 796 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 AP5B1Q2VPB7 878 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC10A6Q3KNW5 377 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PPM1JQ5JR12 505 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PRAMEF18Q5VWM3 479 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 FRRS1Q6ZNA5 592 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 QSOX2Q6ZRP7 698 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 AHSA2Q719I0 299 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MRPL41Q8IXM3 137 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC7A5P1Q8MH63 180 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 HASPINQ8TF76 798 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC41A3Q96GZ6 507 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TMEM98Q9Y2Y6 226 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 INPPL1O15357 1258 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PDPK1O15530 556 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PROM1O43490 865 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TSPAN15O95858 294 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 G0S2P27469 103 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PTGER3P43115 390 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PSMA6P60900 246 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 KLHL26Q53HC5 615 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ZFAND4Q86XD8 727 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC29A1Q99808 456 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TREX2Q9BQ50 279 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 ADGRE3Q9BY15 652 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TRPS1Q9UHF7 1281 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MYH4Q9Y623 1939 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 CXorf51AA0A1B0GTR3 108 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLC30A4O14863 429 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TSPAN3O60637 253 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ALPLP05186 524 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SLURP2P0DP57 97 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 EFNA1P20827 205 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 IGFBP5P24593 272 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SERPINF1P36955 418 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 NDUFA9Q16795 377 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 AARDQ4LEZ3 155 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ALG10Q5BKT4 473 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 C9orf57Q5W0N0 161 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 CYP20A1Q6UW02 462 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 RNF111Q6ZNA4 994 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms