RNA–Protein interactions for RNA: ENST00000262291.8

VMP1-201, Transcript of vacuole membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMP1, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-201ENST00000262291 OR2T12Q8NG77 320 aa13.09□□□□□ -0.31
VMP1-201ENST00000262291 HM13Q8TCT9 377 aa13.09□□□□□ -0.31
VMP1-201ENST00000262291 TFGQ92734 400 aaPredicted RBP13.09□□□□□ -0.31
VMP1-201ENST00000262291 COX14Q96I36 57 aa13.09□□□□□ -0.31
VMP1-201ENST00000262291 NSMCE2Q96MF7 247 aa13.09□□□□□ -0.31
VMP1-201ENST00000262291 OR52A5Q9H2C5 316 aa13.09□□□□□ -0.31
VMP1-201ENST00000262291 GON4LQ3T8J9 2241 aa13.08□□□□□ -0.31
VMP1-201ENST00000262291 KNL1Q8NG31 2342 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 PCM1Q15154 2024 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 A0A1W2PQU0 124 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 CCDC85CA6NKD9 419 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 CBFA2T3O75081 653 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 LAMP1P11279 417 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 COX7A2P14406 83 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 PNLIPRP1P54315 467 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 RAE1P78406 368 aaKnown RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 TFF2Q03403 129 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 KIAA1958Q8N8K9 716 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 TSPAN14Q8NG11 270 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 JPH3Q8WXH2 748 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 NCLNQ969V3 563 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 VPS50Q96JG6 964 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 COX4I2Q96KJ9 171 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 EPHX3Q9H6B9 360 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 XKR8Q9H6D3 395 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 LIMD1Q9UGP4 676 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 ANAPC2Q9UJX6 822 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 OAZ3Q9UMX2 235 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 DYRK1BQ9Y463 629 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 GNG14A0A1W2PPG7 69 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 H3BQ06 376 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 KLF8O95600 359 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 HTR1EP28566 365 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 CAMK2GQ13555 558 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 TTC23LQ6PF05 361 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 TMEM184AQ6ZMB5 413 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 ZNF551Q7Z340 670 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 LRRTM4Q86VH4 590 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 PTRH1Q86Y79 214 aaKnown RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 GLB1L3Q8NCI6 653 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 WDR48Q8TAF3 677 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 CSGALNACT1Q8TDX6 532 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 SOX17Q9H6I2 414 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 WDR26Q9H7D7 661 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 ARMC1Q9NVT9 282 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 SPATA6Q9NWH7 488 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 TMED5Q9Y3A6 229 aa13.08□□□□□ -0.32
VMP1-201ENST00000262291 FAM32AQ9Y421 112 aaKnown RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 MAGED1Q9Y5V3 778 aaPredicted RBP13.08□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3DA0A087WVF3 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3IA0A087WXS9 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3EA0A087X179 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3KA0A087X1G2 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3FA6NER0 549 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3LB9A6J9 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 RFXANKO14593 260 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 VEGFDO43915 354 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 ABCB1P08183 1280 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 ANXA4P09525 319 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3HP0C7X1 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 PRPS2P11908 318 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 CD72P21854 359 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 LAPTM5Q13571 262 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 RUNDC3AQ59EK9 446 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3GQ6DHY5 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3CQ6IPX1 549 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 ZNF621Q6ZSS3 439 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 GPR180Q86V85 440 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 TBC1D3Q8IZP1 549 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 TRPV3Q8NET8 790 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 RAB7BQ96AH8 199 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 SH3KBP1Q96B97 665 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 NEURL2Q9BR09 285 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 CHID1Q9BWS9 393 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 ASIC5Q9NY37 505 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 THEGQ9P2T0 379 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 DYTNA2CJ06 578 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 FASP25445 335 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 KIR3DL1P43629 444 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 IST1P53990 364 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 CLDN2P57739 230 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 MC1RQ01726 317 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 NKG7Q16617 165 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 MED27Q6P2C8 311 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 ADAMTSL4Q6UY14 1074 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 RNF165Q6ZSG1 346 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 PLD3Q8IV08 490 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 CROCCP3Q8IVE0 287 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 RIMKLAQ8IXN7 391 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 MMP21Q8N119 569 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 CHCHD4Q8N4Q1 142 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 DUS3LQ96G46 650 aaKnown RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 DPH2Q9BQC3 489 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 CCDC177Q9NQR7 707 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 AGPAT4Q9NRZ5 378 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 CUEDC1Q9NWM3 386 aaPredicted RBP13.07□□□□□ -0.32
VMP1-201ENST00000262291 TAC3Q9UHF0 121 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 PCDHB3Q9Y5E6 796 aa13.07□□□□□ -0.32
VMP1-201ENST00000262291 RNF103-CHMP3A0A140T963 221 aa13.06□□□□□ -0.32
VMP1-201ENST00000262291 PIPSLA2A3N6 862 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms