RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CALML4Q96GE6 196 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 RSRC1Q96IZ7 334 aaKnown RBP3.14□□□□□ -1.91
CD44-239ENST00000639002 FEVQ99581 238 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 CDCA3Q99618 268 aaPredicted RBP3.14□□□□□ -1.91
CD44-239ENST00000639002 SDF4Q9BRK5 362 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 ANKZF1Q9H8Y5 726 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 BAIAP2L1Q9UHR4 511 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 PCDHGB4Q9UN71 923 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 CELA1Q9UNI1 258 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 ATRXP46100 2492 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 IGSF1Q8N6C5 1336 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 IPO8O15397 1037 aaKnown RBP3.13□□□□□ -1.91
CD44-239ENST00000639002 ZNF354AO60765 605 aaPredicted RBP3.13□□□□□ -1.91
CD44-239ENST00000639002 ATP6AP2O75787 350 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 HPP00738 406 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 EIF2DP41214 584 aaKnown RBP3.13□□□□□ -1.91
CD44-239ENST00000639002 ATP4BP51164 291 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 OR1D5P58170 312 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 DCDC1P59894 354 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 RASGEF1BQ0VAM2 473 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 NPTX1Q15818 432 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 FAM182AQ5T1J6 154 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 C6orf163Q5TEZ5 329 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 OR4C11Q6IEV9 310 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 REG3GQ6UW15 175 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 VITQ6UXI7 678 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 TAGAPQ8N103 731 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 GPC2Q8N158 579 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 MOB3AQ96BX8 217 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 KLHL5Q96PQ7 755 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 ABHD1Q96SE0 405 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 PANK2Q9BZ23 570 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 CDH20Q9HBT6 801 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 DNAJC4Q9NNZ3 241 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 SELENOKQ9Y6D0 94 aa3.13□□□□□ -1.91
CD44-239ENST00000639002 SURF4O15260 269 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 ACSL3O95573 720 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 ALOX12P18054 663 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 AOC1P19801 751 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 FKBP3Q00688 224 aaKnown RBP3.12□□□□□ -1.91
CD44-239ENST00000639002 STK4Q13043 487 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 VWC2Q2TAL6 325 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 SLC34A3Q8N130 599 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 RTL3Q8N8U3 475 aaKnown RBP3.12□□□□□ -1.91
CD44-239ENST00000639002 TSPAN14Q8NG11 270 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 ROBO4Q8WZ75 1007 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 GCNAQ96QF7 691 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 CPNE1Q99829 537 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 ATF6BQ99941 703 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 SLITRK2Q9H156 845 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 ZHX3Q9H4I2 956 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 NOL11Q9H8H0 719 aaKnown RBP3.12□□□□□ -1.91
CD44-239ENST00000639002 DDX25Q9UHL0 483 aaKnown RBP3.12□□□□□ -1.91
CD44-239ENST00000639002 SLC24A2Q9UI40 661 aa3.12□□□□□ -1.91
CD44-239ENST00000639002 SPRY1O43609 319 aaPredicted RBP3.11□□□□□ -1.91
CD44-239ENST00000639002 PCP11498 1178 aaKnown RBP3.11□□□□□ -1.91
CD44-239ENST00000639002 EPCAMP16422 314 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 PAX3P23760 479 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 KHKP50053 298 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 PRKG2Q13237 762 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 CUL4AQ13619 759 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 IL11RAQ14626 422 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 RILPL1Q5EBL4 403 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 SLC24A5Q71RS6 500 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 DNAAF5Q86Y56 855 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 OR4N5Q8IXE1 308 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 RCOR2Q8IZ40 523 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 LRTM2Q8N967 370 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 NOA1Q8NC60 698 aaKnown RBP3.11□□□□□ -1.91
CD44-239ENST00000639002 OR52B6Q8NGF0 335 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 METTL21AQ8WXB1 218 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 NSMAFQ92636 917 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 DGAT2Q96PD7 388 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 CNOT10Q9H9A5 744 aaKnown RBP3.11□□□□□ -1.91
CD44-239ENST00000639002 TBC1D22BQ9NU19 505 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 MRPL15Q9P015 296 aaKnown RBP3.11□□□□□ -1.91
CD44-239ENST00000639002 IL17BQ9UHF5 180 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 KIF25-AS1Q9Y6Z4 181 aa3.11□□□□□ -1.91
CD44-239ENST00000639002 ARID4BQ4LE39 1312 aaPredicted RBP3.11□□□□□ -1.91
CD44-239ENST00000639002 ADAM20O43506 726 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 BEST1O76090 585 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 SLCO2B1O94956 709 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 SAGP10523 405 aaPredicted RBP3.1□□□□□ -1.91
CD44-239ENST00000639002 DLK1P80370 383 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 OPCMLQ14982 345 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 CAMKMTQ7Z624 323 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 GPD1LQ8N335 351 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 Q8N7P7 452 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 RASGEF1AQ8N9B8 481 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 SYT2Q8N9I0 419 aaPredicted RBP3.1□□□□□ -1.91
CD44-239ENST00000639002 CSNK1G2-AS1Q8NCQ2 148 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 OR4D10Q8NGI6 311 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 TEKT4Q8WW24 435 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 JAKMIP2Q96AA8 810 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 MUS81Q96NY9 551 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 PRRG4Q9BZD6 226 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 JPT2Q9H910 190 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 GSN-AS1Q9NRJ2 163 aa3.1□□□□□ -1.91
CD44-239ENST00000639002 CPSF3Q9UKF6 684 aaKnown RBP3.1□□□□□ -1.91
CD44-239ENST00000639002 NEDD4P46934 1319 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms