RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NAGLUP54802 743 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 DOC2AQ14183 400 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ZC3H12BQ5HYM0 836 aaKnown RBP18.88■□□□□ 0.61
UPF3A-211ENST00000618700 FBXO42Q6P3S6 717 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 PLD3Q8IV08 490 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ANKRD42Q8N9B4 389 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ZNF501Q96CX3 271 aaPredicted RBP18.88■□□□□ 0.61
UPF3A-211ENST00000618700 MOCOSQ96EN8 888 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 PTCD3Q96EY7 689 aaKnown RBP18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ZNF285Q96NJ3 590 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 FCRL4Q96PJ5 515 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 OR6C1Q96RD1 312 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 SCNM1Q9BWG6 230 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ACSS2Q9NR19 701 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 FBXO8Q9NRD0 319 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ENAMQ9NRM1 1142 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 GEMIN8Q9NWZ8 242 aaKnown RBP18.88■□□□□ 0.61
UPF3A-211ENST00000618700 PLCL2Q9UPR0 1127 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 NEUROG3Q9Y4Z2 214 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 NCOR2Q9Y618 2525 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 TRBC2A0A5B9 178 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 TRIM13O60858 407 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 SUPT7LO94864 414 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 JMJD7P0C870 316 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 SPINK2P20155 84 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 BCL6P41182 706 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 CDH13P55290 713 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 WDR4P57081 412 aaKnown RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 NAA20P61599 178 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 RPS15AP62244 130 aaKnown RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 MEF2AQ02078 507 aaPredicted RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 IRF8Q02556 426 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 CLCQ05315 142 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 TRAF3Q13114 568 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 CHIT1Q13231 466 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 SLBPQ14493 270 aaKnown RBP eCLIP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 XKR6Q5GH73 641 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 IGF2-ASQ6U949 168 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 FRMD7Q6ZUT3 714 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 MCATQ8IVS2 390 aaKnown RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 ZNF740Q8NDX6 193 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 OR52B6Q8NGF0 335 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 OR6Y1Q8NGX8 325 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 OR2A5Q96R48 311 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 SELENOSQ9BQE4 189 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 AIF1LQ9BQI0 150 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 EFCAB11Q9BUY7 163 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 NTMT1Q9BV86 223 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 GATA5Q9BWX5 397 aaPredicted RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 NRSN2Q9GZP1 204 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 PITHD1Q9GZP4 211 aaPredicted RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 NOL11Q9H8H0 719 aaKnown RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 POLR1BQ9H9Y6 1135 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 FANCEQ9HB96 536 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 SEMA4BQ9NPR2 832 aaPredicted RBP18.87■□□□□ 0.61
UPF3A-211ENST00000618700 PISDQ9UG56 409 aa18.87■□□□□ 0.61
UPF3A-211ENST00000618700 KCNE1BA0A087WTH5 132 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 FEZF1A0PJY2 475 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 TMEM150CB9EJG8 249 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 BIRC5O15392 142 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 UGDHO60701 494 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 MLYCDO95822 493 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 CTSBP07858 339 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 FGF5P12034 268 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 HPDP32754 393 aaPredicted RBP18.86■□□□□ 0.61
UPF3A-211ENST00000618700 GRK3P35626 688 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 RAB15P59190 212 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 GABREP78334 506 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 CYP4F3Q08477 520 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 ASPHQ12797 758 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 IL11RAQ14626 422 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 FRMPD2BQ6IN97 320 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 CYB5D1Q6P9G0 228 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 CCNYL1Q8N7R7 359 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 L3MBTL4Q8NA19 623 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 OR8K5Q8NH50 307 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 OR1L3Q8NH93 324 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 TRPC4APQ8TEL6 797 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 PPP4R1Q8TF05 950 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 PMEPA1Q969W9 287 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 THAP11Q96EK4 314 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 ZNF382Q96SR6 550 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 APMAPQ9HDC9 416 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 MED4Q9NPJ6 270 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 SLC39A1Q9NY26 324 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 NKIRAS1Q9NYS0 192 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 CEP295Q9C0D2 2601 aa18.86■□□□□ 0.61
UPF3A-211ENST00000618700 A0A0J9YVX5 310 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 A0A1B0GTL3 188 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 PPP6CO00743 305 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 LCMT2O60294 686 aaKnown RBP18.85■□□□□ 0.61
UPF3A-211ENST00000618700 SRPX2O60687 465 aaPredicted RBP18.85■□□□□ 0.61
UPF3A-211ENST00000618700 TSPAN8P19075 237 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 SCTRP47872 440 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 CCNG1P51959 295 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 SHC2P98077 582 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 FOXM1Q08050 763 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 LCP2Q13094 533 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 RTP5Q14D33 572 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 CFAP157Q5JU67 520 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms