RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 FAM227AF5H4B4 570 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 SLC16A6O15403 523 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 AMD1P17707 334 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 CD22P20273 847 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 PAX3P23760 479 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 GABRR2P28476 465 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 MRPL19P49406 292 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 MC1RQ01726 317 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 SFSWAPQ12872 951 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 IRF5Q13568 498 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 C5orf22Q49AR2 442 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 CHST9Q7L1S5 443 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 OR9Q2Q8NGE9 314 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 VN1R3Q9BXE9 311 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 OR51E2Q9H255 320 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 TRIM39Q9HCM9 518 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 EXOSC4Q9NPD3 245 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 TRPM7Q96QT4 1865 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 RANBP2P49792 3224 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 WNT9AO14904 365 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 SLC22A1O15245 554 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 WBP4O75554 376 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 ETFAP13804 333 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 FPR1P21462 350 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 GABARAPL2P60520 117 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 AP1S1P61966 158 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 INO80DQ53TQ3 878 aaPredicted RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 KIAA1614Q5VZ46 1190 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 DPY19L3Q6ZPD9 716 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 SPATC1Q76KD6 591 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 CALHM3Q86XJ0 350 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 PTOV1Q86YD1 416 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 ZZZ3Q8IYH5 903 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 ENTHD1Q8IYW4 607 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 HJURPQ8NCD3 748 aaPredicted RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 WDR12Q9GZL7 423 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 DSN1Q9H410 356 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 DNAJC11Q9NVH1 559 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 MAP4K5Q9Y4K4 846 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 A0A1W2PQ45 241 aaPredicted RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 A0A1W2PQY0 241 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 MGAT4DA6NG13 374 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 AQP9O43315 295 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 ANXA4P09525 319 aaPredicted RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 OR56A5P0C7T3 313 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 SERPINB1P30740 379 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 RYKP34925 604 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 BDKRB1P46663 353 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 PTSQ03393 145 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 DUOXA1Q1HG43 343 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 RFX4Q33E94 735 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 KDM4DQ6B0I6 523 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 KLHL17Q6TDP4 642 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 FAM217AQ8IXS0 508 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 SLC5A8Q8N695 610 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 CNDP2Q96KP4 475 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 ACAT2Q9BWD1 397 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 TTLL2Q9BWV7 592 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 MROQ9BYG7 248 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 BRD9Q9H8M2 597 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 DNMT3BQ9UBC3 853 aaKnown RBP13.59□□□□□ -0.23
COL6A1-207ENST00000612273 B4GALT6Q9UBX8 382 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 CHD5Q8TDI0 1954 aa13.59□□□□□ -0.23
COL6A1-207ENST00000612273 DOCK6Q96HP0 2047 aa13.58□□□□□ -0.23
COL6A1-207ENST00000612273 PNMA8CA0A1B0GUJ8 204 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 GRXCR2A6NFK2 248 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 KPNA5O15131 536 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SUV39H1O43463 412 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 CNOT3O75175 753 aaKnown RBP13.58□□□□□ -0.24
COL6A1-207ENST00000612273 IGSF6O95976 241 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SOAT1P35610 550 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SPIBQ01892 262 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 GAB1Q13480 694 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 COX20Q5RI15 118 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 HMGN2P46Q86SG4 172 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 MFSD4AQ8N468 514 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 OR6Q1Q8NGQ2 317 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 ZNF461Q8TAF7 563 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SAMD11Q96NU1 681 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 CDK5RAP1Q96SZ6 601 aaKnown RBP13.58□□□□□ -0.24
COL6A1-207ENST00000612273 TCF25Q9BQ70 676 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 DUSP21Q9H596 190 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 TM9SF3Q9HD45 589 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SPASTQ9UBP0 616 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SH3BP1Q9Y3L3 701 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 A6NL46 340 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 GRK5P34947 590 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 ILF2Q12905 390 aaKnown RBP13.58□□□□□ -0.24
COL6A1-207ENST00000612273 DOC2AQ14183 400 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 GPNMBQ14956 572 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 MED22Q15528 200 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 HIST2H2ACQ16777 129 aaPredicted RBP13.58□□□□□ -0.24
COL6A1-207ENST00000612273 TIGD6Q17RP2 521 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 STX19Q8N4C7 294 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 DYNC2LI1Q8TCX1 351 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 ZNF300Q96RE9 604 aaPredicted RBP13.58□□□□□ -0.24
COL6A1-207ENST00000612273 KCNS3Q9BQ31 491 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 DUSP26Q9BV47 211 aa13.58□□□□□ -0.24
COL6A1-207ENST00000612273 SGK2Q9HBY8 427 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms