RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	BLK	P51451	505 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	ATXN3	P54252	364 aa	Predicted RBP	11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	DIO3	P55073	304 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	CTBS	Q01459	385 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	CSTF1	Q05048	431 aa	Known RBP	11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	FZD2	Q14332	565 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	RBBP7	Q16576	425 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	C18orf21	Q32NC0	220 aa	Predicted RBP	11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	UAP1L1	Q3KQV9	507 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	TBCEL	Q5QJ74	424 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	CYP2R1	Q6VVX0	501 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	B3GNT6	Q6ZMB0	384 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	SPRED1	Q7Z699	444 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	C11orf74	Q86VG3	221 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	PARG	Q86W56	976 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	ADGRG5	Q8IZF4	528 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	RGL4	Q8IZJ4	473 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	TSPAN14	Q8NG11	270 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	DNAJB8	Q8NHS0	232 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	ADAMTS16	Q8TE57	1224 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	RAD51AP1	Q96B01	352 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	PPP3R2	Q96LZ3	170 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	PKP4	Q99569	1192 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	PRPF18	Q99633	342 aa	Known RBP	11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	SLC39A3	Q9BRY0	314 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	TMEM79	Q9BSE2	394 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	BTRC	Q9Y297	605 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	RNF11	Q9Y3C5	154 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	ANGPTL3	Q9Y5C1	460 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	SLCO1B1	Q9Y6L6	691 aa		11.3	□□□□□ -0.6
VRK3-223	ENST00000601341	MUC3A	Q02505	3323 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341		A0A1W2PR77	199 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	ZNF839	A8K0R7	811 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	ZNF701	M0R085	212 aa	Predicted RBP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	SCAMP1	O15126	338 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	VILL	O15195	856 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	RASAL1	O95294	804 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	PGM3	O95394	542 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	SLC16A8	O95907	504 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	MYF6	P23409	242 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	JAK1	P23458	1154 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	GSK3B	P49841	420 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	ILF3	Q12906	894 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	GTF2H2	Q13888	395 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	NADK2	Q4G0N4	442 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	KRT80	Q6KB66	452 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	GTF2H2C	Q6P1K8	395 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	WASH2P	Q6VEQ5	465 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	LPCAT2	Q7L5N7	544 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	LRRC70	Q7Z2Q7	622 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	DCUN1D3	Q8IWE4	304 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	OR9A1P	Q8NGU1	263 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	OR5K2	Q8NHB8	316 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	C1orf216	Q8TAB5	229 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	PROKR1	Q8TCW9	393 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	CIB1	Q99828	191 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	KCTD14	Q9BQ13	255 aa	Predicted RBP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	YTHDF1	Q9BYJ9	559 aa	Known RBP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	TMEM168	Q9H0V1	697 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	TRIT1	Q9H3H1	467 aa	Known RBP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	SLC32A1	Q9H598	525 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	CLK4	Q9HAZ1	481 aa	Known RBP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	TM9SF3	Q9HD45	589 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	WASH6P	Q9NQA3	447 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	ASIC5	Q9NY37	505 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	ZNF639	Q9UID6	485 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	MAGEL2	Q9UJ55	1249 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	WDR37	Q9Y2I8	494 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	ASB1	Q9Y576	335 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341	PTGDR2	Q9Y5Y4	395 aa		11.29	□□□□□ -0.6
VRK3-223	ENST00000601341		A0A1B0GTL3	188 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TCRBV5S2	A0A599	114 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ASPDH	A6ND91	283 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TLR4	O00206	839 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	KATNA1	O75449	491 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TIPRL	O75663	272 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	BMP10	O95393	424 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	EPB42	P16452	691 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ACTR1B	P42025	376 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	HAL	P42357	657 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	GDF5	P43026	501 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	SLC6A12	P48065	614 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ALDH3B2	P48448	385 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ERVPABLB-1	P60509	514 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ACTR1A	P61163	376 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	EIF2B5	Q13144	721 aa	Known RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ATP6AP1	Q15904	470 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	NRF1	Q16656	503 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	PTCHD3	Q3KNS1	767 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	CCSMST1	Q4G0I0	132 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	AGTRAP	Q6RW13	159 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ABRAXAS1	Q6UWZ7	409 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341		Q6ZSR9	355 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	GOLGA7	Q7Z5G4	137 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	MAML2	Q8IZL2	1156 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TMEM105	Q8N8V8	129 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	DTWD2	Q8NBA8	298 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	GLB1L3	Q8NCI6	653 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	OR8J3	Q8NGG0	315 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms