RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ACADLP28330 430 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 DLSTP36957 453 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 ALDH18A1P54886 795 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 HERVK_113P63132 956 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 OCRLQ01968 901 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 KLRB1Q12918 225 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 RCN2Q14257 317 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 IL11RAQ14626 422 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 CFAP157Q5JU67 520 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 ATP1A1-AS1Q5TC04 95 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 CGB2Q6NT52 195 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 C6orf15Q6UXA7 325 aaPredicted RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 L3HYPDHQ96EM0 354 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 THOC1Q96FV9 657 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 TMEM79Q9BSE2 394 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 ERVK-6Q9BXR3 956 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 TRIM54Q9BYV2 358 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 SHCBP1LQ9BZQ2 653 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 NSRP1Q9H0G5 558 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 ZNF768Q9H5H4 540 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 POT1Q9NUX5 634 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 ARL15Q9NXU5 204 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 SCHIP1Q9P0W5 487 aaPredicted RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 ACSL5Q9ULC5 683 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 WDR37Q9Y2I8 494 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 MRPS18BQ9Y676 258 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 KCNMB2Q9Y691 235 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 CFAP20Q9Y6A4 193 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 SPTBN1Q01082 2364 aaKnown RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 CLEC18AA5D8T8 446 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 MKRN2OSH3BPM6 223 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 IFRD1O00458 451 aaPredicted RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 NPHS1O60500 1241 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 KCNJ13O60928 360 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 SUPT7LO94864 414 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 NTRK1P04629 796 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 RPS17P08708 135 aaKnown RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 ANXA5P08758 320 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 HIST1H2AGP0C0S8 130 aaPredicted RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 ZNF28P17035 718 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 TYRP1P17643 537 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 HIST1H2ADP20671 130 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 IDSP22304 550 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 F8A1P23610 371 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 SLC19A1P41440 591 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 HSPA7P48741 367 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 SEPHS1P49903 392 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 CDKL1Q00532 357 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 CYB5D1Q6P9G0 228 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 ABRAXAS1Q6UWZ7 409 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 CLEC18BQ6UXF7 455 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 UNC5DQ6UXZ4 953 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 FRMD7Q6ZUT3 714 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 PRSS42Q7Z5A4 293 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 CPLX4Q7Z7G2 160 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 RBM12BQ8IXT5 1001 aaKnown RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 CLEC18CQ8NCF0 446 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 GALNT6Q8NCL4 622 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 PHC3Q8NDX5 983 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 OR5AR1Q8NGP9 310 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 MCOLN3Q8TDD5 553 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 TFGQ92734 400 aaPredicted RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 RHBDF1Q96CC6 855 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 HIST1H2AHQ96KK5 128 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 C12orf66Q96MD2 445 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 NSUN5Q96P11 429 aaKnown RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 TGM7Q96PF1 710 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 OR6C1Q96RD1 312 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 INSM2Q96T92 566 aaPredicted RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 SORT1Q99523 831 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 HIST1H2AJQ99878 128 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 H2AFJQ9BTM1 129 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 PITPNM3Q9BZ71 974 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 DRC3Q9H069 523 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 THAP1Q9NVV9 213 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 ZNF624Q9P2J8 865 aaPredicted RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 KCND3Q9UK17 655 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 PTBP2Q9UKA9 531 aaKnown RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 CROTQ9UKG9 612 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 POLHQ9Y253 713 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 TP53TG5Q9Y2B4 290 aa12.2□□□□□ -0.46
UPF1-208ENST00000600012 RP1L1Q8IWN7 2480 aaPredicted RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 SNRNP200O75643 2136 aaKnown RBP12.2□□□□□ -0.46
UPF1-208ENST00000600012 RASSF9O75901 435 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 KIAA0754O94854 1291 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 GP1BBP13224 206 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 CAPZBP47756 277 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 CDH13P55290 713 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 AP1S2P56377 157 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 SH3BP2P78314 561 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 ARL13AQ5H913 290 aaPredicted RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 FAM219BQ5XKK7 198 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 SULT1C3Q6IMI6 304 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 CAPRIN2Q6IMN6 1127 aaKnown RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 TCTN3Q6NUS6 607 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 WASH2PQ6VEQ5 465 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 AGR3Q8TD06 166 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 PPP4R1Q8TF05 950 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 ZNF483Q8TF39 744 aaPredicted RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 UBTD2Q8WUN7 234 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms