RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SLC35A5Q9BS91 424 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 MRM3Q9HC36 420 aaKnown RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 CD248Q9HCU0 757 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 SMPD3Q9NY59 655 aaPredicted RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 EPHB6O15197 1021 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 JAM2P57087 298 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 TAS2R39P59534 338 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 FAM174BQ3ZCQ3 159 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 ZNF440Q8IYI8 595 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 ZNF565Q8N9K5 539 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 SNIP1Q8TAD8 396 aaKnown RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 ADAMTS10Q9H324 1103 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 C15orf41Q9Y2V0 281 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 SHBGP04278 402 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 SLC6A6P31641 620 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 GRM7Q14831 915 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 LRRC73Q5JTD7 316 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 ZDHHC21Q8IVQ6 265 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 ZNF548Q8NEK5 533 aaPredicted RBP19.89■□□□□ 0.78
UPF1-207ENST00000599848 OR2L8Q8NGY9 312 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 ITGB1BP2Q9UKP3 347 aa19.89■□□□□ 0.78
UPF1-207ENST00000599848 C3P1Q6ZMU1 363 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 ASPGQ86U10 573 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 SAPCD2Q86UD0 394 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 MCFD2Q8NI22 146 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 PEX13Q92968 403 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 COL21A1Q96P44 957 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 GFM1Q96RP9 751 aaKnown RBP19.89■□□□□ 0.77
UPF1-207ENST00000599848 OR8D2Q9GZM6 311 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 FAM240BA0A1B0GVZ2 78 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 TBX1O43435 398 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 HERC3Q15034 1050 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 PON3Q15166 354 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 DHCR24Q15392 516 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 AGTRAPQ6RW13 159 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 MSANTD1Q6ZTZ1 278 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 TBC1D10AQ9BXI6 508 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 CXorf56Q9H5V9 222 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 RHBDL2Q9NX52 303 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 PPP4R1LQ9P1A2 415 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 POFUT2Q9Y2G5 429 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 UGT1A9O60656 530 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 PEX14O75381 377 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 TYRP1P17643 537 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 UGT1A6P19224 532 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 UGT1A4P22310 534 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 SMARCD3Q6STE5 483 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 UGT1A7Q9HAW7 530 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 UGT1A10Q9HAW8 530 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 UGT1A8Q9HAW9 530 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 APOBEC3GQ9HC16 384 aaKnown RBP19.89■□□□□ 0.77
UPF1-207ENST00000599848 SMURF1Q9HCE7 757 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 FBRSL1Q9HCM7 1045 aaKnown RBP19.89■□□□□ 0.77
UPF1-207ENST00000599848 GDE1Q9NZC3 331 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 ZIM2Q9NZV7 527 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 DFNA5O60443 496 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 TGFB1P01137 390 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 KCNQ1P51787 676 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 POU6F2P78424 691 aaPredicted RBP19.89■□□□□ 0.77
UPF1-207ENST00000599848 ST3GAL4Q11206 333 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 SIRPB2Q5JXA9 342 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 RALGPS2Q86X27 583 aaPredicted RBP19.89■□□□□ 0.77
UPF1-207ENST00000599848 POPDC3Q9HBV1 291 aa19.89■□□□□ 0.77
UPF1-207ENST00000599848 ZNF432O94892 652 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 FESP07332 822 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 SLURP2P0DP57 97 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 CRB2Q5IJ48 1285 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 ABHD17BQ5VST6 288 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 PRPF38BQ5VTL8 546 aaKnown RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 KBTBD2Q8IY47 623 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 SLC44A3Q8N4M1 653 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 EZH1Q92800 747 aaPredicted RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 EMID1Q96A84 441 aaPredicted RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 ADAD1Q96M93 576 aaKnown RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 DUSP23Q9BVJ7 150 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 WDR55Q9H6Y2 383 aaPredicted RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 B4GALT6Q9UBX8 382 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 FAM172BPA6NC97 362 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 ANGPTL1O95841 491 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 EBLN1P0CF75 366 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 POLR2CP19387 275 aaPredicted RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 RPS15AP62244 130 aaKnown RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 USP30Q70CQ3 517 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 CHCHD4Q8N4Q1 142 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 OR5K1Q8NHB7 308 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 KIAA1191Q96A73 305 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 PIWIL1Q96J94 861 aaKnown RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 UCK2Q9BZX2 261 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 MPC1LP0DKB6 136 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 EEFSECP57772 596 aaKnown RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 GPRC6AQ5T6X5 926 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 MAMDC4Q6UXC1 1216 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 RNF111Q6ZNA4 994 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 DNAJB9Q9UBS3 223 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 FKBP7Q9Y680 259 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 U3KQV3 271 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 ARL6IP5O75915 188 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 SEMA4FO95754 770 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 GALK2Q01415 458 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 PUDPQ08623 228 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms