RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TCP1P17987 556 aaKnown RBP19.45■□□□□ 0.7
SHMT1-209ENST00000582653 TSFMP43897 325 aaKnown RBP19.45■□□□□ 0.7
SHMT1-209ENST00000582653 PGGT1BP53609 377 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 SYT16Q17RD7 645 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 SPANXN3Q5MJ09 141 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 GARNL3Q5VVW2 1013 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 B3GNTL1Q67FW5 361 aaPredicted RBP19.45■□□□□ 0.7
SHMT1-209ENST00000582653 ISLR2Q6UXK2 745 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 MBOAT1Q6ZNC8 495 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 NDUFAF7Q7L592 441 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 PCGF5Q86SE9 256 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 ARHGEF39Q8N4T4 335 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 AMER3Q8N944 861 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 ST6GALNAC3Q8NDV1 305 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 ZNF160Q9HCG1 818 aa19.45■□□□□ 0.7
SHMT1-209ENST00000582653 MRPS2Q9Y399 296 aaKnown RBP19.45■□□□□ 0.7
SHMT1-209ENST00000582653 A0A0A6YYC8 382 aaPredicted RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 I3L1I5 382 aaPredicted RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 TXNDC9O14530 226 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 PRPF4O43172 522 aaKnown RBP eCLIP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 KLHL18O94889 574 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 TTC4O95801 387 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 SLC26A3P40879 764 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 EMP2P54851 167 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 TBPL1P62380 186 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 MFAP5Q13361 173 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 DSG2Q14126 1118 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 ZNF169Q14929 603 aaPredicted RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 TLR1Q15399 786 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 FAAH2Q6GMR7 532 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 UGT3A1Q6NUS8 523 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 MCOLN3Q8TDD5 553 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 ALKBH8Q96BT7 664 aaKnown RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 CERS2Q96G23 380 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 C5orf34Q96MH7 638 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 MACROD1Q9BQ69 325 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 TGIF2Q9GZN2 237 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 ATG10Q9H0Y0 220 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 PPANQ9NQ55 473 aaKnown RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 CCDC177Q9NQR7 707 aaPredicted RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 TAS2R13Q9NYV9 303 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 SH2B3Q9UQQ2 575 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 DOCK10Q96BY6 2186 aa19.44■□□□□ 0.7
SHMT1-209ENST00000582653 SPTAN1Q13813 2472 aaKnown RBP19.44■□□□□ 0.7
SHMT1-209ENST00000582653 A1L4Q6 167 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 EIF3FO00303 357 aaPredicted RBP19.43■□□□□ 0.7
SHMT1-209ENST00000582653 MAP2K7O14733 419 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 ELK3P41970 407 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 MAT1AQ00266 395 aaKnown RBP19.43■□□□□ 0.7
SHMT1-209ENST00000582653 CDC16Q13042 620 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 TEDDM1Q5T9Z0 273 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 RPUSD3Q6P087 351 aaKnown RBP19.43■□□□□ 0.7
SHMT1-209ENST00000582653 MAMDC2Q7Z304 686 aaPredicted RBP19.43■□□□□ 0.7
SHMT1-209ENST00000582653 CREG2Q8IUH2 290 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 CNTN4Q8IWV2 1026 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 KBTBD2Q8IY47 623 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 SHISA5Q8N114 240 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 AMER2Q8N7J2 671 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 FAR1Q8WVX9 515 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 LINGO1Q96FE5 620 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 CFAP36Q96G28 342 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 CCDC138Q96M89 665 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 DRC3Q9H069 523 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 TMEM184CQ9NVA4 438 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 CHMP2BQ9UQN3 213 aa19.43■□□□□ 0.7
SHMT1-209ENST00000582653 SPTBN1Q01082 2364 aaKnown RBP19.42■□□□□ 0.7
SHMT1-209ENST00000582653 NSG1A0A0A6YYJ2 146 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 A0A1W2PQ72 361 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 IDSB3KWA1 339 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 PCDH17O14917 1159 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 C8GP07360 202 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 CXCR2P25025 360 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 RGS4P49798 205 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 GNG11P61952 73 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 FAM53BQ14153 422 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 PHKG1Q16816 387 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 TRMT10BQ6PF06 316 aaKnown RBP19.42■□□□□ 0.7
SHMT1-209ENST00000582653 AGTRAPQ6RW13 159 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 LINC00696Q6ZRV3 163 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 PALM2Q8IXS6 379 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 MYO1HQ8N1T3 1032 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 CATSPER1Q8NEC5 780 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 GRHL3Q8TE85 626 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 PSMF1Q92530 271 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 WDR83Q9BRX9 315 aaKnown RBP19.42■□□□□ 0.7
SHMT1-209ENST00000582653 TRIM51Q9BSJ1 452 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 NAT9Q9BTE0 207 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 PARVBQ9HBI1 364 aa19.42■□□□□ 0.7
SHMT1-209ENST00000582653 MKKSQ9NPJ1 570 aaPredicted RBP19.42■□□□□ 0.7
SHMT1-209ENST00000582653 HEATR5BQ9P2D3 2071 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 FEZF1A0PJY2 475 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 CLDN1O95832 211 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 HEXBP07686 556 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 ANXA5P08758 320 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 COX6A1P12074 109 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 EDN3P14138 238 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 FDXRP22570 491 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 EFNA3P52797 238 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 DR1Q01658 176 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 EEF1A2Q05639 463 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms