RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 HLA-FP30511 346 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 SFTPDP35247 375 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 TSFMP43897 325 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 RGS7P49802 495 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 HUNKP57058 714 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 CDH18Q13634 790 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 NECTIN1Q15223 517 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 UGCGQ16739 394 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 ZNF613Q6PF04 617 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 SUSD1Q6UWL2 747 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 SLC24A5Q71RS6 500 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 FCRLAQ7L513 359 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 NRARPQ7Z6K4 114 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 LRRTM1Q86UE6 522 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 RCOR2Q8IZ40 523 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 LRTM2Q8N967 370 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 CCDC63Q8NA47 563 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 ZNF689Q96CS4 500 aaPredicted RBP3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 C18orf12Q96KH6 178 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 BTBD9Q96Q07 612 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 NDNQ99608 321 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 MGME1Q9BQP7 344 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 RNF121Q9H920 327 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 PRDM4Q9UKN5 801 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 EIF5BO60841 1220 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 TSPY3P0CV98 308 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 TSPY8P0CW00 308 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 F3P13726 295 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 SOX3P41225 446 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 CRKLP46109 303 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 OR3A2P47893 321 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 MFAP3P55082 362 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 CYCSP99999 105 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 TSPY1Q01534 308 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 SULT2A1Q06520 285 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 MTF1Q14872 753 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM174BQ3ZCQ3 159 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 SUSD4Q5VX71 490 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 CYB5D1Q6P9G0 228 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 MOXD1Q6UVY6 613 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 SPATA21Q7Z572 469 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 DNAJB7Q7Z6W7 309 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 GPC2Q8N158 579 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 GBP7Q8N8V2 638 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 MAPK1IP1LQ8NDC0 245 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 NSMCE3Q96MG7 304 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 GBP5Q96PP8 586 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 VGLL1Q99990 258 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 FERMT1Q9BQL6 677 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 CABLES2Q9BTV7 478 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 TDRD1Q9BXT4 1180 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 UPF3AQ9H1J1 476 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 EGLN3Q9H6Z9 239 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 ELF5Q9UKW6 265 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 SELENOKQ9Y6D0 94 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 CSNK1G3Q9Y6M4 447 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 IL16Q14005 1332 aa3.88□□□□□ -1.79
SMCHD1-204ENST00000581226 ARHGEF37A1IGU5 675 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 KRTAP16-1A8MUX0 517 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 C17orf105B2RV13 164 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 E9PQ18 207 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 PRAF2O60831 178 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 SPP1P10451 314 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 HNF4AP41235 474 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 CAPZA1P52907 286 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 DCDC1P59894 354 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 TNK1Q13470 666 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 PSMD6Q15008 389 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 TAB1Q15750 504 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 MTHFSDQ2M296 383 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 LBHQ53QV2 105 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 CES4AQ5XG92 561 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 NOTUMQ6P988 496 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 CHMP1BQ7LBR1 199 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 ZNF440Q8IYI8 595 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 NUP37Q8NFH4 326 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 OR4C15Q8NGM1 316 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 SETD6Q8TBK2 473 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 SLC26A7Q8TE54 656 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 P2RX5Q93086 422 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 C2orf48Q96LS8 159 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 ZNF300Q96RE9 604 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 WWTR1Q9GZV5 400 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 MED20Q9H944 212 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 RAVER2Q9HCJ3 691 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 CHCHD3Q9NX63 227 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 THEGQ9P2T0 379 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 PA2G4Q9UQ80 394 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 HEG1Q9ULI3 1381 aa3.87□□□□□ -1.79
SMCHD1-204ENST00000581226 A0A087WV48 116 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 MEX3AA1L020 520 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 GBAP04062 536 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 TFCP2Q12800 502 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 TAZQ16635 292 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 FGD3Q5JSP0 725 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM91A1Q658Y4 838 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 OR4C11Q6IEV9 310 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 DOK6Q6PKX4 331 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 METTL7BQ6UX53 244 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 ANKRD33Q7Z3H0 272 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms