RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PIWIL3Q7Z3Z3 882 aaKnown RBP22.02■■□□□ 1.11
VPS53-211ENST00000571805 EGFL6Q8IUX8 553 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 FOXJ1Q92949 421 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 CLP1Q92989 425 aaKnown RBP22.02■■□□□ 1.11
VPS53-211ENST00000571805 SH3KBP1Q96B97 665 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 FAM83CQ9BQN1 747 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 CHST8Q9H2A9 424 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 TPT1P8Q9HAU6 139 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 FAM8A1Q9UBU6 413 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 DGKBQ9Y6T7 804 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 NEDD8-MDP1E9PL57 170 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 CYP2A6P11509 494 aaPredicted RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 EFNA1P20827 205 aaPredicted RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 CA8P35219 290 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 CCR2P41597 374 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 CRYBA2P53672 197 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 GRHL2Q6ISB3 625 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 AGTRAPQ6RW13 159 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 ADIPOR2Q86V24 386 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 TTC29Q8NA56 475 aaPredicted RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 METTL2AQ96IZ6 378 aaKnown RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 CORO1BQ9BR76 489 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 DUSP26Q9BV47 211 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 RIOK2Q9BVS4 552 aaKnown RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 STOX2Q9P2F5 926 aaPredicted RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 TPRKBQ9Y3C4 175 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 GMPPBQ9Y5P6 360 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 GABRR3A8MPY1 467 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 SCAMP2O15127 329 aaKnown RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 CBFA2T3O75081 653 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 EPHA2P29317 976 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 PCDH1Q08174 1060 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 NAE1Q13564 534 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 TRIM60Q495X7 471 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 HENMT1Q5T8I9 393 aaKnown RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 ADNP2Q6IQ32 1131 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 HORMAD1Q86X24 394 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 KLHDC8AQ8IYD2 350 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 GPR65Q8IYL9 337 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 CDC26Q8NHZ8 85 aa22.01■■□□□ 1.11
VPS53-211ENST00000571805 SAMHD1Q9Y3Z3 626 aaKnown RBP22.01■■□□□ 1.11
VPS53-211ENST00000571805 MAN1A2O60476 641 aa22■■□□□ 1.11
VPS53-211ENST00000571805 GABARAPO95166 117 aa22■■□□□ 1.11
VPS53-211ENST00000571805 FKBP9O95302 570 aa22■■□□□ 1.11
VPS53-211ENST00000571805 C8AP07357 584 aa22■■□□□ 1.11
VPS53-211ENST00000571805 NUDT7P0C024 238 aa22■■□□□ 1.11
VPS53-211ENST00000571805 HNF4AP41235 474 aa22■■□□□ 1.11
VPS53-211ENST00000571805 MAP2K4P45985 399 aa22■■□□□ 1.11
VPS53-211ENST00000571805 ITGA1P56199 1179 aa22■■□□□ 1.11
VPS53-211ENST00000571805 NR1D2Q14995 579 aa22■■□□□ 1.11
VPS53-211ENST00000571805 PDE12Q6L8Q7 609 aaKnown RBP22■■□□□ 1.11
VPS53-211ENST00000571805 TRAM1L1Q8N609 369 aa22■■□□□ 1.11
VPS53-211ENST00000571805 C7orf34Q96L11 122 aa22■■□□□ 1.11
VPS53-211ENST00000571805 MYOCQ99972 504 aa22■■□□□ 1.11
VPS53-211ENST00000571805 ZBP1Q9H171 429 aa22■■□□□ 1.11
VPS53-211ENST00000571805 PAK6Q9NQU5 681 aaPredicted RBP22■■□□□ 1.11
VPS53-211ENST00000571805 IRAK4Q9NWZ3 460 aa22■■□□□ 1.11
VPS53-211ENST00000571805 C1orf226A1L170 272 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 E9PQ18 207 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 HNRNPCP07910 306 aaKnown RBP eCLIP21.99■■□□□ 1.111e-6■■□□□ 11.4
VPS53-211ENST00000571805 HSD3B1P14060 373 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 HSD3B2P26439 372 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 DEFB115Q30KQ5 88 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 TMEM215Q68D42 235 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 FAHD1Q6P587 224 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 PARP8Q8N3A8 854 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 LILRA3Q8N6C8 439 aaPredicted RBP21.99■■□□□ 1.11
VPS53-211ENST00000571805 ATL1Q8WXF7 558 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 APOL4Q9BPW4 351 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 BRF2Q9HAW0 419 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 SGK2Q9HBY8 427 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 SIRT5Q9NXA8 310 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 BTNL2Q9UIR0 455 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 B3GNT3Q9Y2A9 372 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 LTBP2Q14767 1821 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 TSPAN6O43657 245 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 SULT1C4O75897 302 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 TIMP2P16035 220 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 CTSCP53634 463 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 MAD2L1BPQ15013 274 aaPredicted RBP21.99■■□□□ 1.11
VPS53-211ENST00000571805 TSPYL5Q86VY4 417 aaPredicted RBP21.99■■□□□ 1.11
VPS53-211ENST00000571805 CCDC71Q8IV32 467 aaPredicted RBP21.99■■□□□ 1.11
VPS53-211ENST00000571805 RAVER1Q8IY67 606 aaKnown RBP21.99■■□□□ 1.11
VPS53-211ENST00000571805 C1orf52Q8N6N3 182 aaKnown RBP21.99■■□□□ 1.11
VPS53-211ENST00000571805 CHPT1Q8WUD6 406 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 STARD8Q92502 1023 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 RORBQ92753 470 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 TIFAQ96CG3 184 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 MED8Q96G25 268 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 BCL7BQ9BQE9 202 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 FZD4Q9ULV1 537 aa21.99■■□□□ 1.11
VPS53-211ENST00000571805 LAMA2P24043 3122 aaKnown RBP21.98■■□□□ 1.11
VPS53-211ENST00000571805 NPC1O15118 1278 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 LEFTY1O75610 366 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 MYO1DO94832 1006 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 OPRL1P41146 370 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 PREPP48147 710 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 MASP1P48740 699 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 SMN1Q16637 294 aaKnown RBP21.98■■□□□ 1.11
VPS53-211ENST00000571805 CPTPQ5TA50 214 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms