RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TMEM184CQ9NVA4 438 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SPATA6Q9NWH7 488 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 ANKMY1Q9P2S6 941 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 G3BP2Q9UN86 482 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 CYP8B1Q9UNU6 501 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 TDRKHQ9Y2W6 561 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 SCN8AQ9UQD0 1980 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 BPTFQ12830 3046 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 CKAP5Q14008 2032 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 KRBA1A5PL33 1030 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ANTXRLA6NF34 631 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 E7EQ34 232 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 FFAR3O14843 346 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 GPR42O15529 346 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 GUCY1B2O75343 617 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ERN1O75460 977 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 EEDO75530 441 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 IGHA1P01876 353 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 IGHV4-34P06331 123 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ALDOCP09972 364 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 THEGLP0DJG4 465 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 AMD1P17707 334 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 XRCC1P18887 633 aaPredicted RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 ITGAXP20702 1163 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 CMPK1P30085 196 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 PKLRP30613 574 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 DPP6P42658 865 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TSFMP43897 325 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 CPA2P48052 419 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ACTR3P61158 418 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 PSME3P61289 254 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 AP2B1P63010 937 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 RPL38P63173 70 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 SLC25A3Q00325 362 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TGM3Q08188 693 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 BNIP2Q12982 314 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 FZD5Q13467 585 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 SIM2Q14190 667 aaPredicted RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 KIR2DS3Q14952 304 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 KIAA0040Q15053 153 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ELOCQ15369 112 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TMEM35AQ53FP2 167 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ANXA8L1Q5VT79 327 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 C1orf146Q5VVC0 180 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 REP15Q6BDI9 236 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ZFP1Q6P2D0 407 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 KLHL35Q6PF15 583 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 PAOXQ6QHF9 649 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 Q6ZS52 159 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 IKBIPQ70UQ0 350 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TMPRSS11BQ86T26 416 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 SLC9B2Q86UD5 537 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 PARGQ86W56 976 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TRIM48Q8IWZ4 208 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 DPP10Q8N608 796 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 POU5F2Q8N7G0 328 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 KDF1Q8NAX2 398 aaPredicted RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 TRPV3Q8NET8 790 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 OR4K1Q8NGD4 311 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 OR5AR1Q8NGP9 310 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 OR2T11Q8NH01 316 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 NEIL2Q969S2 332 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TESCQ96BS2 214 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 RCN3Q96D15 328 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 MTERF3Q96E29 417 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 PRR11Q96HE9 360 aaPredicted RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 ANKRD27Q96NW4 1050 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 OR4K3Q96R72 315 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 SARGQ9BW04 601 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 GPR174Q9BXC1 333 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TBC1D17Q9HA65 648 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 GPR27Q9NS67 375 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 IMP3Q9NV31 184 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 ATAD3AQ9NVI7 634 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 ADAM29Q9UKF5 820 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 KCNK6Q9Y257 313 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 PRKAB1Q9Y478 270 aa7.68□□□□□ -1.18
VPS39-213ENST00000570062 TCF20Q9UGU0 1960 aaKnown RBP7.68□□□□□ -1.18
VPS39-213ENST00000570062 A0A088AWK7 358 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 A0A1B0GTL3 188 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 TRBC2A0A5B9 178 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 PIPSLA2A3N6 862 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 URADA6NGE7 173 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 NR5A2O00482 541 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 TRIM38O00635 465 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ZW10O43264 779 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 GMNNO75496 209 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 CLEC3AO75596 197 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 KCNH1O95259 989 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ATP6V1G2O95670 118 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 VIPP01282 170 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 G6PDP11413 515 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 PCNAP12004 261 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 BCKDHAP12694 445 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 PPIBP23284 216 aaKnown RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 RPL10P27635 214 aaKnown RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 CD38P28907 300 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 S100A3P33764 101 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 AHRP35869 848 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ACTR1BP42025 376 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms