RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 APOA1P02647 267 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ERBB2P04626 1255 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 S100A8P05109 93 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SERPINB2P05120 415 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GP1BAP07359 652 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 YES1P07947 543 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CHRM5P08912 532 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 NR2F1P10589 423 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TXNP10599 105 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 KITP10721 976 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MBL2P11226 248 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 CYP19A1P11511 503 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 PSKH1P11801 424 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 DARSP14868 501 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 TNNI3P19429 210 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZP3P21754 424 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GALP22466 123 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GLRA2P23416 452 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CMA1P23946 247 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CALML3P27482 149 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CD38P28907 300 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 UQCRC1P31930 480 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 HNRNPH3P31942 346 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 CCR1P32246 355 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PPM1AP35813 382 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 RPL35P42766 123 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 SYKP43405 635 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PXNP49023 591 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 LIG4P49917 911 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GNG10P50151 68 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CCR9P51686 369 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 AKR1D1P51857 326 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PDE1AP54750 535 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CASP6P55212 293 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 YBEYP58557 167 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 LILRA4P59901 499 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ACTR3P61158 418 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ACTR1AP61163 376 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ERVK-8P63133 956 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TNNC1P63316 161 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MRPS21P82921 87 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 C17orf67Q0P5P2 114 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 INCA1Q0VD86 236 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 BST2Q10589 180 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 DMP1Q13316 513 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 SLC14A1Q13336 389 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ITGADQ13349 1161 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ART3Q13508 389 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 THOC5Q13769 683 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 DDX39BQ13838 428 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 BOP1Q14137 746 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 FLOT2Q14254 428 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KCNJ12Q14500 433 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TRAM2Q15035 370 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PON3Q15166 354 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PSMD5Q16401 504 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KYNUQ16719 465 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TIGD6Q17RP2 521 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TYSND1Q2T9J0 566 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZIK1Q3SY52 487 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZBED5Q49AG3 693 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SLC9C1Q4G0N8 1177 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 LRRC24Q50LG9 513 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KLHL26Q53HC5 615 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 LBHQ53QV2 105 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 C2CD6Q53TS8 623 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZNF805Q5CZA5 627 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 RARS2Q5T160 578 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 OGFRL1Q5TC84 451 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 ARHGAP40Q5TG30 622 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 LIN9Q5TKA1 542 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KLHDC7AQ5VTJ3 777 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PLA2G4FQ68DD2 849 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ANKRD26P1Q6NSI1 321 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZNF544Q6NX49 715 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZFP1Q6P2D0 407 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TTC33Q6PID6 262 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 CCDC137Q6PK04 289 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 TFAP2EQ6VUC0 442 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 NPSR1Q6W5P4 371 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MEX3BQ6ZN04 569 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 SLC26A9Q7LBE3 791 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 EFL1Q7Z2Z2 1120 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 PPP1R32Q7Z5V6 425 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 AMIGO2Q86SJ2 522 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GPAT4Q86UL3 456 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 LRRTM4Q86VH4 590 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 RASAL3Q86YV0 1011 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TMEM126BQ8IUX1 230 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GPALPP1Q8IXQ4 340 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TIGD4Q8IY51 512 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 C12orf29Q8N999 325 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 IL17RCQ8NAC3 791 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KDM1BQ8NB78 822 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 Q8NFD4 153 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TSPAN14Q8NG11 270 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 OR7G3Q8NG95 312 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 OR4M2Q8NGB6 313 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SLC35G2Q8TBE7 412 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MAGEE2Q8TD90 523 aaPredicted RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms