RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 IQCF5A8MTL0 148 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 SMTNL1A8MU46 457 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 NDC80O14777 642 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 HS6ST1O60243 411 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 NME2P1O60361 137 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 GPC4O75487 556 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 PDE9AO76083 593 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 APOA4P06727 396 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 INHBBP09529 407 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 NME2P22392 152 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 BDKRB1P46663 353 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 AVPR1BP47901 424 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 TAS2R50P59544 299 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 SNTB1Q13884 538 aaKnown RBP15.24■□□□□ 0.03
CLK3-223ENST00000568488 GARNL3Q5VVW2 1013 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 ACAD11Q709F0 780 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 ANKRD37Q7Z713 158 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 MYRIPQ8NFW9 859 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 GSDMBQ8TAX9 411 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 RERGQ96A58 199 aaPredicted RBP15.24■□□□□ 0.03
CLK3-223ENST00000568488 TMEM125Q96AQ2 219 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 TTC1Q99614 292 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 TSSK1BQ9BXA7 367 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 HEMGNQ9BXL5 484 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 SYNPO2LQ9H987 977 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 ARNT2Q9HBZ2 717 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 MMP25Q9NPA2 562 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 ALG6Q9Y672 507 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 JMJD1CQ15652 2540 aa15.24■□□□□ 0.03
CLK3-223ENST00000568488 hCG_1818297A0A087WSY0 165 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 A0A0U1RQJ8 604 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 CCDC162PA2VCL2 907 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 STK10O94804 968 aaKnown RBP15.23■□□□□ 0.03
CLK3-223ENST00000568488 TFEBP19484 476 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 COMTP21964 271 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 FOXN2P32314 431 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 SLC1A1P43005 524 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 DLX5P56178 289 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 TSTA3Q13630 321 aaPredicted RBP15.23■□□□□ 0.03
CLK3-223ENST00000568488 NAA25Q14CX7 972 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 SLC18A3Q16572 532 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 CCDC181Q5TID7 509 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 ARSKQ6UWY0 536 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 OR5M3Q8NGP4 307 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 OR9A4Q8NGU2 314 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 SPATA3Q8NHX4 192 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 LKAAEAR1Q8TD35 194 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 RASSF1Q9NS23 344 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 LMBRD1Q9NUN5 540 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 PIH1D1Q9NWS0 290 aaKnown RBP15.23■□□□□ 0.03
CLK3-223ENST00000568488 CAPN11Q9UMQ6 739 aa15.23■□□□□ 0.03
CLK3-223ENST00000568488 A0A1W2PPV9 198 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 C1orf105O95561 183 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 CYB561P49447 251 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 AGTR2P50052 363 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 NDUFA9Q16795 377 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 PAPD4Q6PIY7 484 aaKnown RBP15.22■□□□□ 0.03
CLK3-223ENST00000568488 CAMKMTQ7Z624 323 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 RPS19BP1Q86WX3 136 aaKnown RBP15.22■□□□□ 0.03
CLK3-223ENST00000568488 CDC20BQ86Y33 519 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 SHISA5Q8N114 240 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 KRT222Q8N1A0 295 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 POGLUT1Q8NBL1 392 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 HMGCLL1Q8TB92 370 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 ARSGQ96EG1 525 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 PLCD4Q9BRC7 762 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 CARD6Q9BX69 1037 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 SLC6A16Q9GZN6 736 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 MRPS30Q9NP92 439 aaKnown RBP15.22■□□□□ 0.03
CLK3-223ENST00000568488 RUVBL2Q9Y230 463 aaKnown RBP15.22■□□□□ 0.03
CLK3-223ENST00000568488 NFS1Q9Y697 457 aa15.22■□□□□ 0.03
CLK3-223ENST00000568488 MACROD2A1Z1Q3 448 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 STATHP02808 62 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 AOAHP28039 575 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 TPP2P29144 1249 aaPredicted RBP15.21■□□□□ 0.03
CLK3-223ENST00000568488 KIR2DL3P43628 341 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 ITGA8P53708 1063 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 TMED2Q15363 201 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 SFT2D3Q587I9 215 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 CMPK2Q5EBM0 449 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 ARHGAP11AQ6P4F7 1023 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 SUSD1Q6UWL2 747 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 CXXC5Q7LFL8 322 aaKnown RBP15.21■□□□□ 0.03
CLK3-223ENST00000568488 SULF2Q8IWU5 870 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 RHOT2Q8IXI1 618 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 OR51Q1Q8NH59 317 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 MBD6Q96DN6 1003 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 PPP1R2P1Q96PQ5 205 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 LPAR4Q99677 370 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 HCN3Q9P1Z3 774 aa15.21■□□□□ 0.03
CLK3-223ENST00000568488 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.21■□□□□ 0.034e-7■■■□□ 16.3
CLK3-223ENST00000568488 NSD1Q96L73 2696 aaPredicted RBP15.2■□□□□ 0.02
CLK3-223ENST00000568488 TXNDC9O14530 226 aa15.2■□□□□ 0.02
CLK3-223ENST00000568488 P2RX6O15547 441 aa15.2■□□□□ 0.02
CLK3-223ENST00000568488 PHF2O75151 1096 aa15.2■□□□□ 0.02
CLK3-223ENST00000568488 HEXAP06865 529 aa15.2■□□□□ 0.02
CLK3-223ENST00000568488 CTNNA2P26232 953 aa15.2■□□□□ 0.02
CLK3-223ENST00000568488 RPA3P35244 121 aaPredicted RBP15.2■□□□□ 0.02
CLK3-223ENST00000568488 XCR1P46094 333 aa15.2■□□□□ 0.02
CLK3-223ENST00000568488 PTK6Q13882 451 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms