RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 HAUS1Q96CS2 278 aa11.06□□□□□ -0.64
CLK3-222ENST00000568232 MVB12AQ96EY5 273 aa11.06□□□□□ -0.64
CLK3-222ENST00000568232 DMRT3Q9NQL9 472 aa11.06□□□□□ -0.64
CLK3-222ENST00000568232 KLK4Q9Y5K2 254 aa11.06□□□□□ -0.64
CLK3-222ENST00000568232 ZANQ9Y493 2812 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 A0A0G2JNJ9 132 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 OR2A25A4D2G3 310 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 OR51F1A6NGY5 319 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 SOWAHDA6NJG2 315 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 OR1I1O60431 355 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 CST8O60676 142 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 TNNT1P13805 278 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 TPP2P29144 1249 aaPredicted RBP11.05□□□□□ -0.64
CLK3-222ENST00000568232 CCR7P32248 378 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 NR2C2P49116 596 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 NKX6-1P78426 367 aaPredicted RBP11.05□□□□□ -0.64
CLK3-222ENST00000568232 PLOD1Q02809 727 aaPredicted RBP11.05□□□□□ -0.64
CLK3-222ENST00000568232 SPARCL1Q14515 664 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 KAZNQ674X7 775 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 VSIG1Q86XK7 387 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 SULF2Q8IWU5 870 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 ARHGEF39Q8N4T4 335 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 SLC5A8Q8N695 610 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 OR5M9Q8NGP3 310 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 M1APQ8TC57 530 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 CDKN2AIPNLQ96HQ2 116 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 VAT1Q99536 393 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 DPH7Q9BTV6 452 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 ACAT2Q9BWD1 397 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 PACSIN1Q9BY11 444 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 DEFB127Q9H1M4 99 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 GBA3Q9H227 469 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 MMP25Q9NPA2 562 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 PNPLA3Q9NST1 481 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 Q9UFV3 132 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 CBLCQ9ULV8 474 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 ALG6Q9Y672 507 aa11.05□□□□□ -0.64
CLK3-222ENST00000568232 CUBNO60494 3623 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 A0A1W2PPV9 198 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 FAM171A2A8MVW0 826 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 NPIPA2E9PIF3 369 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 NPIPA3F8WFD2 350 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 H7C0S8 307 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 NDC80O14777 642 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 ANXA9O76027 345 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 FKBP9O95302 570 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 STATHP02808 62 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 OR56A5P0C7T3 313 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 ZFP36L2P47974 494 aaKnown RBP11.04□□□□□ -0.64
CLK3-222ENST00000568232 ITGA8P53708 1063 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 EXT1Q16394 746 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 GXYLT1Q4G148 440 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 ARHGAP11AQ6P4F7 1023 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 BZW1Q7L1Q6 419 aaKnown RBP11.04□□□□□ -0.64
CLK3-222ENST00000568232 RPS19BP1Q86WX3 136 aaKnown RBP11.04□□□□□ -0.64
CLK3-222ENST00000568232 VWA5B2Q8N398 1253 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 KIF2BQ8N4N8 673 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 OR9A4Q8NGU2 314 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 LKAAEAR1Q8TD35 194 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 TTYH2Q9BSA4 534 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 SLC6A16Q9GZN6 736 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 DRC3Q9H069 523 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 NEUROD4Q9HD90 331 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 NLE1Q9NVX2 485 aaPredicted RBP11.04□□□□□ -0.64
CLK3-222ENST00000568232 UVRAGQ9P2Y5 699 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 C19orf25Q9UFG5 118 aaPredicted RBP11.04□□□□□ -0.64
CLK3-222ENST00000568232 TRHDEQ9UKU6 1024 aa11.04□□□□□ -0.64
CLK3-222ENST00000568232 IQCF5A8MTL0 148 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 H7C1Q1 480 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 QSOX1O00391 747 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 LCE2BO14633 110 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 SMAD7O15105 426 aaKnown RBP11.03□□□□□ -0.64
CLK3-222ENST00000568232 P2RX6O15547 441 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 PEX1O43933 1283 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 GPC4O75487 556 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 RPN2P04844 631 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 GLI4P10075 376 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 TPH1P17752 444 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 PSMB4P28070 264 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 RBL1P28749 1068 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 UQCRC1P31930 480 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 ADH7P40394 386 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 CDKN2BP42772 138 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 BDKRB1P46663 353 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 CYB561P49447 251 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 GPR85P60893 370 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 ITIH4Q14624 930 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 SFT2D3Q587I9 215 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 PAPD4Q6PIY7 484 aaKnown RBP11.03□□□□□ -0.64
CLK3-222ENST00000568232 PACS1Q6VY07 963 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 PRSS41Q7RTY9 318 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 WDR53Q7Z5U6 358 aaPredicted RBP11.03□□□□□ -0.64
CLK3-222ENST00000568232 CCDC50Q8IVM0 306 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 POGLUT1Q8NBL1 392 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 C16orf52Q8NHV5 167 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 P3H4Q92791 437 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 COX4I2Q96KJ9 171 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 QKIQ96PU8 341 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLK3-222ENST00000568232 C19orf43Q9BQ61 176 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 RUVBL2Q9Y230 463 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms