RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ACSS2Q9NR19 701 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 TLK1Q9UKI8 766 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 G3BP2Q9UN86 482 aaKnown RBP12.78□□□□□ -0.36
CLK3-213ENST00000563842 DYRK1BQ9Y463 629 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 HEMK1Q9Y5R4 338 aaPredicted RBP12.78□□□□□ -0.36
CLK3-213ENST00000563842 DOCK10Q96BY6 2186 aa12.77□□□□□ -0.36
CLK3-213ENST00000563842 B8ZZF3 427 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 PEX12O00623 359 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 NRP2O60462 931 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 C1QL1O75973 258 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 CRABP2P29373 138 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 CCR8P51685 355 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 CSNK1G2P78368 415 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 OCA2Q04671 838 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 FAM53BQ14153 422 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 CSHL1Q14406 222 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 SLC9A5Q14940 896 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 SLMAPQ14BN4 828 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 TSNQ15631 228 aaKnown RBP12.77□□□□□ -0.37
CLK3-213ENST00000563842 ZKSCAN8Q15776 578 aaPredicted RBP12.77□□□□□ -0.37
CLK3-213ENST00000563842 CDKL4Q5MAI5 379 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 RAPH1Q70E73 1250 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 TBC1D1Q86TI0 1168 aaPredicted RBP12.77□□□□□ -0.37
CLK3-213ENST00000563842 LURAP1LQ8IV03 231 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 IFT20Q8IY31 132 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 CAMKVQ8NCB2 501 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 ABHD11Q8NFV4 315 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 ANKRD49Q8WVL7 239 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 PYCR2Q96C36 320 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 FER1L6-AS2Q96M78 137 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 RUVBL1Q9Y265 456 aaKnown RBP12.77□□□□□ -0.37
CLK3-213ENST00000563842 KCNE2Q9Y6J6 123 aa12.77□□□□□ -0.37
CLK3-213ENST00000563842 KALRNO60229 2985 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 SCN2AQ99250 2005 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 ARGFXA6NJG6 315 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 PHGDHO43175 533 aaKnown RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 KLHL41O60662 606 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 WISP3O95389 354 aaPredicted RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 ATXN8OSP0DMR3 200 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 CDH1P12830 882 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 FBLP22087 321 aaKnown RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 OTX2P32243 289 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 SLC26A3P40879 764 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 OR1D4P47884 311 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 AVPR1BP47901 424 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 NFKB2Q00653 900 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 NFATC3Q12968 1075 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 TGFBIQ15582 683 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 NKG7Q16617 165 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 TCTN3Q6NUS6 607 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 ZNF605Q86T29 641 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 THOC6Q86W42 341 aaKnown RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 GPSM1Q86YR5 675 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 SLC5A11Q8WWX8 675 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 ABHD17AQ96GS6 310 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 UBXN10Q96LJ8 280 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 SARGQ9BW04 601 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 CAPS2Q9BXY5 557 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 DRC3Q9H069 523 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 ING2Q9H160 280 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 ACSS3Q9H6R3 686 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 CNOT10Q9H9A5 744 aaKnown RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 NMRAL1Q9HBL8 299 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 SLC22A11Q9NSA0 550 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 NINJ2Q9NZG7 142 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 ZNF282Q9UDV7 671 aaPredicted RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 IKZF3Q9UKT9 509 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 IKBKGQ9Y6K9 419 aa12.76□□□□□ -0.37
CLK3-213ENST00000563842 TNRC6AQ8NDV7 1962 aaKnown RBP12.76□□□□□ -0.37
CLK3-213ENST00000563842 TRBC2A0A5B9 178 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 CCDC189A1A4V9 331 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 FAM155BO75949 473 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 IPO13O94829 963 aaKnown RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 S100BP04271 92 aaPredicted RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 SLC35G6P0C7Q6 338 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 CD1DP15813 335 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 DSG2Q14126 1118 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 HKDC1Q2TB90 917 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 LACTB2Q53H82 288 aaPredicted RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 SULT1C3Q6IMI6 304 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 TAOK1Q7L7X3 1001 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 ASPGQ86U10 573 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 PLD3Q8IV08 490 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 MFSD9Q8NBP5 474 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 OR4K1Q8NGD4 311 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 STAG3L4Q8TBR4 150 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 KIAA1191Q96A73 305 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 MIEF2Q96C03 454 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 RHBDF1Q96CC6 855 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 MMABQ96EY8 250 aaPredicted RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 C10orf90Q96M02 699 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 AIF1LQ9BQI0 150 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 FUT8Q9BYC5 575 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 CDC42EP4Q9H3Q1 356 aaKnown RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 PELI2Q9HAT8 420 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 SEMA3GQ9NS98 782 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 SLC22A14Q9Y267 594 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 ACOT9Q9Y305 439 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 PCDHGB7Q9Y5F8 929 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms