RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CCNDBP1O95273 360 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 FKBP9O95302 570 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 DLGAP3O95886 979 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TBX6O95947 436 aaPredicted RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 NTRK1P04629 796 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 MSL3P1P0C860 447 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ITGAXP20702 1163 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 CCND1P24385 295 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 CDH13P55290 713 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 VSX2P58304 361 aaPredicted RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 ABATP80404 500 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 REEP5Q00765 189 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 GPS2Q13227 327 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 DOC2AQ14183 400 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 PCBP2Q15366 365 aaKnown RBP eCLIP9.36□□□□□ -0.91
CLK3-208ENST00000562626 PDK4Q16654 411 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 HKDC1Q2TB90 917 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TBC1D25Q3MII6 688 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TMTC4Q5T4D3 741 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 NXPE4Q6UWF7 544 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 UNQ6494/PRO21346Q6UXR6 183 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ZYG11AQ6WRX3 759 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 LRRC70Q7Z2Q7 622 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 VN1R5Q7Z5H4 357 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TCAIMQ8N3R3 496 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 RNF175Q8N4F7 328 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ARHGEF39Q8N4T4 335 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TEX9Q8N6V9 391 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ZNF655Q8N720 491 aaPredicted RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 ANKRD53Q8N9V6 530 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ARMC2Q8NEN0 867 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 OR52B6Q8NGF0 335 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TCP10LQ8TDR4 215 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ZNF483Q8TF39 744 aaPredicted RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 TLCD1Q96CP7 247 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 PGM2Q96G03 612 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 C10orf90Q96M02 699 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 FAM111AQ96PZ2 611 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 CDK15Q96Q40 435 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 RUFY1Q96T51 708 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 HAUS8Q9BT25 410 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 MECRQ9BV79 373 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 DDA1Q9BW61 102 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 PCBD2Q9H0N5 130 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 TMEM184CQ9NVA4 438 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 GEMIN8Q9NWZ8 242 aaKnown RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 ANKMY1Q9P2S6 941 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ZNF225Q9UK10 706 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 RARRES3Q9UL19 164 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 ZNF490Q9ULM2 529 aaPredicted RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 PLCL2Q9UPR0 1127 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 PLLPQ9Y342 182 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 DYRK1BQ9Y463 629 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 PCDHGA4Q9Y5G9 962 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 CCDC189A1A4V9 331 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 STX16-NPEPL1H3BU86 382 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 STX16O14662 325 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 NVLO15381 856 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 ZNF749O43361 778 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 SMIM24O75264 130 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 OR2B3O76000 313 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 WFS1O76024 890 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 STK17BO94768 372 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 B3GALT4O96024 378 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 EIF2S1P05198 315 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 ATXN8OSP0DMR3 200 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 EZRP15311 586 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 ATP5F1P24539 256 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 RBMS1P29558 406 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 ARRB2P32121 409 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 ETV4P43268 484 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 CCR8P51685 355 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 FOXL2P58012 376 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 NFKB2Q00653 900 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 ACY1Q03154 408 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 HYAL2Q12891 473 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 TRAF3Q13114 568 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 CHIT1Q13231 466 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 GTF2H2Q13888 395 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 E2F2Q14209 437 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 SLBPQ14493 270 aaKnown RBP eCLIP9.35□□□□□ -0.91
CLK3-208ENST00000562626 IL11RAQ14626 422 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.35□□□□□ -0.91
CLK3-208ENST00000562626 TTMPQ5BVD1 217 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 DCAF12Q5T6F0 453 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 FAM69BQ5VUD6 431 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 ZNF385CQ66K41 422 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 ATG9BQ674R7 924 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 GTF2H2CQ6P1K8 395 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 CEACAM20Q6UY09 585 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 LCA5Q86VQ0 697 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 PPP1R3BQ86XI6 285 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 METTL27Q8N6F8 245 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 GALNT6Q8NCL4 622 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 TM4SF19Q96DZ7 209 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 WDR34Q96EX3 536 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 NAF1Q96HR8 494 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 PKNOX2Q96KN3 472 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 ZFYVE21Q9BQ24 234 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms