RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 UNC50Q53HI1 259 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 ZC3H12BQ5HYM0 836 aaKnown RBP20.83■□□□□ 0.93
SNX1-210ENST00000560260 ZNF678Q5SXM1 525 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 DCAF12Q5T6F0 453 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 FAM219BQ5XKK7 198 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 ATG9BQ674R7 924 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 CCDC63Q8NA47 563 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 RDH11Q8TC12 318 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 WDR34Q96EX3 536 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 SELENOSQ9BQE4 189 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 IQCGQ9H095 443 aaKnown RBP20.83■□□□□ 0.93
SNX1-210ENST00000560260 FANCEQ9HB96 536 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 STARD5Q9NSY2 213 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 GEMIN8Q9NWZ8 242 aaKnown RBP20.83■□□□□ 0.93
SNX1-210ENST00000560260 COPG2Q9UBF2 871 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 SDK2Q58EX2 2172 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 C1QTNF9BB2RNN3 333 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 OR7A17O14581 309 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 NVLO15381 856 aaKnown RBP20.82■□□□□ 0.92
SNX1-210ENST00000560260 C1QTNF9P0C862 333 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 CPA3P15088 417 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 EPB42P16452 691 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 ETV4P43268 484 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 GCGRP47871 477 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 ITGA1P56199 1179 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 HERVK_113P63132 956 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 CHIT1Q13231 466 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 SLBPQ14493 270 aaKnown RBP eCLIP20.82■□□□□ 0.92
SNX1-210ENST00000560260 TTMPQ5BVD1 217 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 METTL2BQ6P1Q9 378 aaKnown RBP20.82■□□□□ 0.92
SNX1-210ENST00000560260 LSMEM2Q8N112 164 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 ANKRD53Q8N9V6 530 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 L3HYPDHQ96EM0 354 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 SARGQ9BW04 601 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 ERVK-6Q9BXR3 956 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 SPRY4Q9C004 299 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 ENAMQ9NRM1 1142 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 PCDHGA4Q9Y5G9 962 aa20.82■□□□□ 0.92
SNX1-210ENST00000560260 A0A1B0GTL3 188 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 TRBC2A0A5B9 178 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 GOLGA6L10A6NI86 522 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 PPP6CO00743 305 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 CLGNO14967 610 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 OR2B3O76000 313 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 WFS1O76024 890 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 MED26O95402 600 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 TSPAN8P19075 237 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 SCTRP47872 440 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 CDH13P55290 713 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 MAGOHP61326 146 aaKnown RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 RPS15AP62244 130 aaKnown RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 SNRPNP63162 240 aaKnown RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 PCDH1Q08174 1060 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 TBC1D25Q3MII6 688 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 XKR6Q5GH73 641 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 AGBL2Q5U5Z8 902 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 ZFAND4Q86XD8 727 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 SLC22A9Q8IVM8 553 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 C10orf107Q8IVU9 208 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 MFSD9Q8NBP5 474 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 OR52B6Q8NGF0 335 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 OR8K5Q8NH50 307 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 N4BP2L2Q92802 583 aaPredicted RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 TEFMQ96QE5 360 aaKnown RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 MECRQ9BV79 373 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 CAPS2Q9BXY5 557 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 ASPSCR1Q9BZE9 553 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 B3GNT4Q9C0J1 378 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 STMN4Q9H169 189 aaPredicted RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 EHD1Q9H4M9 534 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 NOL11Q9H8H0 719 aaKnown RBP20.81■□□□□ 0.92
SNX1-210ENST00000560260 IPPKQ9H8X2 491 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 ANGPTL3Q9Y5C1 460 aa20.81■□□□□ 0.92
SNX1-210ENST00000560260 TEX51A0A1B0GUA7 166 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 PRPF4O43172 522 aaKnown RBP eCLIP20.8■□□□□ 0.92
SNX1-210ENST00000560260 TLX3O43711 291 aaPredicted RBP20.8■□□□□ 0.92
SNX1-210ENST00000560260 SCRG1O75711 98 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 KIAA0754O94854 1291 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 DLGAP3O95886 979 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 IMPDH1P20839 514 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 CASP2P42575 452 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 IRF8Q02556 426 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 TRAF3Q13114 568 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 TBCCQ15814 346 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 HKDC1Q2TB90 917 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 PRTGQ2VWP7 1150 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 WASHC2DQ5SRD0 308 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 ADNP2Q6IQ32 1131 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 CYB5D1Q6P9G0 228 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 BPHLQ86WA6 291 aaPredicted RBP20.8■□□□□ 0.92
SNX1-210ENST00000560260 ZNF655Q8N720 491 aaPredicted RBP20.8■□□□□ 0.92
SNX1-210ENST00000560260 SLC38A9Q8NBW4 561 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 PTCD3Q96EY7 689 aaKnown RBP20.8■□□□□ 0.92
SNX1-210ENST00000560260 MACROD1Q9BQ69 325 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 AIF1LQ9BQI0 150 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 ZPBPQ9BS86 351 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 GSTO2Q9H4Y5 243 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 SEMA4BQ9NPR2 832 aaPredicted RBP20.8■□□□□ 0.92
SNX1-210ENST00000560260 THSD1Q9NS62 852 aa20.8■□□□□ 0.92
SNX1-210ENST00000560260 OXSMQ9NWU1 459 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms