RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZNF284Q2VY69 593 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PRR5LQ6MZQ0 368 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 TMEM107Q6UX40 140 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 RTL10Q7L3V2 364 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 NLRC3Q7RTR2 1065 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ZNF675Q8TD23 568 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 KIAA1143Q96AT1 154 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ACCSQ96QU6 501 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 WDR77Q9BQA1 342 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PI4K2AQ9BTU6 479 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 GLOD4Q9HC38 313 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 KRT84Q9NSB2 600 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 C1orf112Q9NSG2 853 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 OLA1Q9NTK5 396 aaKnown RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PIM2Q9P1W9 311 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 HCN2Q9UL51 889 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ATXN7L1Q9ULK2 861 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PADI2Q9Y2J8 665 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 FABP12A6NFH5 140 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 BRINP1O60477 761 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SEC22BO75396 215 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 LYPLA2O95372 231 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 HLA-DQB1P01920 261 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 C9P02748 559 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 LPLP06858 475 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 ANXA3P12429 323 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 MLNP12872 115 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 CYP4B1P13584 511 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 YWHAQP27348 245 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 GNA15P30679 374 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 RNF144AP50876 292 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 ACTR1AP61163 376 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 YWHAHQ04917 246 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 KCNAB1Q14722 419 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 TMEM132BQ14DG7 1078 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 TIMM50Q3ZCQ8 353 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 OR2B11Q5JQS5 317 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 CATSPERGQ6ZRH7 1159 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SSX9Q7RTT3 188 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 PIWIL4Q7Z3Z4 852 aaKnown RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SLC43A2Q8N370 569 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 GLYATL2Q8WU03 294 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 HGDQ93099 445 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 ATXN7L3BQ96GX2 97 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SLC38A3Q99624 504 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 TRMOQ9BU70 441 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 CRB3Q9BUF7 120 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SEMA4CQ9C0C4 833 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 ATP13A1Q9HD20 1204 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 NDUFAF4Q9P032 175 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 POLG2Q9UHN1 485 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 NCKAP1Q9Y2A7 1128 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 GLYATL1P3A0A0U1RQE8 302 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 K7ENM7 598 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 TO15178 435 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 DCTP40126 519 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 CASP6P55212 293 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 BTG1P62324 171 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 RPL6Q02878 288 aaKnown RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SLC3A1Q07837 685 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 TP53BP2Q13625 1128 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 NFYCQ13952 458 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SIM2Q14190 667 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 KLHL22Q53GT1 634 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 PYDC2Q56P42 97 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 CES3Q6UWW8 571 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 RBMS3Q6XE24 437 aaKnown RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 DCBLD1Q8N8Z6 715 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 LPCAT1Q8NF37 534 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 RDM1Q8NG50 284 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 GPR152Q8TDT2 470 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 ADAMTS14Q8WXS8 1223 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SLC38A2Q96QD8 506 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 PFDN5Q99471 154 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 BARHL1Q9BZE3 327 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 C11orf49Q9H6J7 331 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 SEBOXQ9HB31 216 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-226ENST00000556825 MIOSQ9NXC5 875 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 PHF11Q9UIL8 331 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 BTNL2Q9UIR0 455 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 ZNF222Q9UK12 451 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 DMRT1Q9Y5R6 373 aa13.4□□□□□ -0.26
SHMT2-226ENST00000556825 USP17L5A8MUK1 530 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 FAM86B1E9PN63 330 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 QSOX1O00391 747 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 MITFO75030 526 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 RBBP9O75884 186 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ANXA6P08133 673 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 NMBP08949 121 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ALDOCP09972 364 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 YWHABP31946 246 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 RORCP51449 518 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 SMSP52788 366 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 OR4D2P58180 307 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CRADDP78560 199 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 SNTB1Q13884 538 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CHRNA6Q15825 494 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 BICRALQ6AI39 1079 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ZPBP2Q6X784 338 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms