RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SMN1Q16637 294 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 CCSMST1Q4G0I0 132 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 OR2T5Q6IEZ7 315 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 MED27Q6P2C8 311 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 HACD2Q6Y1H2 254 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 IGFN1Q86VF2 1251 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 OR2T29Q8NH02 315 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 C11orf16Q9NQ32 467 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SACM1LQ9NTJ5 587 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 INMTO95050 263 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 C6orf47O95873 294 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 C8GP07360 202 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 CDKN2CP42773 168 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 CD47Q08722 323 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SKIV2LQ15477 1246 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 ADNP2Q6IQ32 1131 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 C11orf65Q8NCR3 313 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 ABHD11Q8NFV4 315 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 TRIB3Q96RU7 358 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 FUNDC2Q9BWH2 189 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 ZCCHC2Q9C0B9 1178 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 TOR4AQ9NXH8 423 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 ERVK-18Q9QC07 812 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 PCDHA9Q9Y5H5 950 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 ZNF99A8MXY4 864 aaPredicted RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 TBX1O43435 398 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 POP7O75817 140 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 NR2F1P10589 423 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SHMT2P34897 504 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SEC13P55735 322 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 MXD1Q05195 221 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 CACNA1CQ13936 2221 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 TRIM71Q2Q1W2 868 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 FER1L6Q2WGJ9 1857 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 CATSPEREQ5SY80 951 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 TMEM236Q5W0B7 351 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 HSD11B1LQ7Z5J1 315 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 EPHX4Q8IUS5 362 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 UBE2J2Q8N2K1 259 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 JPH3Q8WXH2 748 aaPredicted RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 GTF2H4Q92759 462 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 IRF7Q92985 503 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SCRN2Q96FV2 425 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 FERD3LQ96RJ6 166 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SORBS1Q9BX66 1292 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 ZNF701M0R085 212 aaPredicted RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 PRPS1L1P21108 318 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 RNF144AP50876 292 aaPredicted RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 ILF2Q12905 390 aaKnown RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 PSRC1Q6PGN9 363 aaPredicted RBP14.38□□□□□ -0.11
CUX1-215ENST00000556210 PHYKPLQ8IUZ5 450 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 SCAIQ8N9R8 606 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 OR9Q1Q8NGQ5 310 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 OR5K1Q8NHB7 308 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 KAT2AQ92830 837 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 UBE2FQ969M7 185 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 EID2BQ96D98 161 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 PDFQ9HBH1 243 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 PCDHGA11Q9Y5H2 935 aa14.38□□□□□ -0.11
CUX1-215ENST00000556210 WNT9AO14904 365 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 RGS10O43665 173 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 OR1F1O43749 312 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 APOL3O95236 402 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 TM4SF4P48230 202 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 SPINT3P49223 89 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 RPS3AP61247 264 aaKnown RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 FOXM1Q08050 763 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 SGCGQ13326 291 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 CYHR1Q6ZMK1 362 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 PRR23BQ6ZRT6 265 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 SLC22A16Q86VW1 577 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 FAM20CQ8IXL6 584 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 GPR65Q8IYL9 337 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 FAM118AQ9NWS6 357 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 NINQ8N4C6 2090 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 TMEM202A6NGA9 273 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 TAPBPO15533 448 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 RHOP08100 348 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 PTPN2P17706 415 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 AZGP1P25311 298 aaKnown RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 RAPSNQ13702 412 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 C2orf27AQ580R0 203 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 RBM48Q5RL73 367 aaKnown RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 C6orf141Q5SZD1 244 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 AKAP14Q86UN6 197 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 ZNF583Q96ND8 569 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 ZNF347Q96SE7 839 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 SLC35A5Q9BS91 424 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 XKR8Q9H6D3 395 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 THUMPD1Q9NXG2 353 aaKnown RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 RUVBL1Q9Y265 456 aaKnown RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 ERGIC3Q9Y282 383 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 TET1Q8NFU7 2136 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 SLC28A2O43868 658 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 MED26O95402 600 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 ETFAP13804 333 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 TCF3P15923 654 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 PFKLP17858 780 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms