RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MZF1P28698 734 aaPredicted RBP16.98■□□□□ 0.31
SYNE3-202ENST00000553340 GRK5P34947 590 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 AP1S1P61966 158 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 IFITM2Q01629 132 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 UGT8Q16880 541 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 GPR33Q49SQ1 333 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 HECTD3Q5T447 861 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 CLIP4Q8N3C7 705 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 TCAIMQ8N3R3 496 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 SYNPOQ8N3V7 929 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 L3MBTL4Q8NA19 623 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 COL21A1Q96P44 957 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 TPK1Q9H3S4 243 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 FAM120CQ9NX05 1096 aaKnown RBP16.98■□□□□ 0.31
SYNE3-202ENST00000553340 MKLN1Q9UL63 735 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 PCDHGB6Q9Y5F9 930 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 TLL1O43897 1013 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 SCN2BO60939 215 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 BPIP17213 487 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 WNT3P56703 355 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 KCNJ10P78508 379 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 FRG2Q64ET8 278 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 ZNF783Q6ZMS7 281 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 UBE2R2Q712K3 238 aaPredicted RBP16.98■□□□□ 0.31
SYNE3-202ENST00000553340 GPR155Q7Z3F1 870 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 NXPE1Q8N323 547 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 FRG2BQ96QU4 278 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 C19orf43Q9BQ61 176 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 OR51E2Q9H255 320 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 TPT1P8Q9HAU6 139 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 NEK6Q9HC98 313 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 TRBC1P01850 177 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 ASGR1P07306 291 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 HIST1H2AGP0C0S8 130 aaPredicted RBP16.97■□□□□ 0.31
SYNE3-202ENST00000553340 IRF1P10914 325 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 HIST1H2ADP20671 130 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 OLR1P78380 273 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 FAM26DQ5JW98 314 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 SPANXN2Q5MJ10 180 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 C6orf183Q5T699 404 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 GDPD3Q7L5L3 318 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 FAM124AQ86V42 546 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 MMAAQ8IVH4 418 aaKnown RBP16.97■□□□□ 0.31
SYNE3-202ENST00000553340 CLECL1Q8IZS7 167 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 STX19Q8N4C7 294 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 OR8J2Q8NGG1 315 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 OR6K2Q8NGY2 324 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 HIST1H2AHQ96KK5 128 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 FEVQ99581 238 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 HIST1H2AJQ99878 128 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 H2AFJQ9BTM1 129 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 TTPALQ9BTX7 342 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 TM6SF2Q9BZW4 377 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 QPCTLQ9NXS2 382 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 PADI2Q9Y2J8 665 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 PCDHB11Q9Y5F2 797 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 PCDHGA3Q9Y5H0 932 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 SNX4O95219 450 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 ADORA3P0DMS8 318 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 SPAM1P38567 509 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 NSG1P42857 185 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 PXNP49023 591 aaPredicted RBP16.97■□□□□ 0.31
SYNE3-202ENST00000553340 RGS6P49758 472 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 UGT2B15P54855 530 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 FAM189BP81408 668 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 ARMCX4Q5H9R4 360 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 ZNF605Q86T29 641 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 Q8N9G6 341 aaPredicted RBP16.97■□□□□ 0.31
SYNE3-202ENST00000553340 RAD9AQ99638 391 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 CLSTN3Q9BQT9 956 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 CHCHD6Q9BRQ6 235 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 SPATA9Q9BWV2 254 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 TRMT13Q9NUP7 481 aaKnown RBP16.97■□□□□ 0.31
SYNE3-202ENST00000553340 GPR83Q9NYM4 423 aa16.97■□□□□ 0.31
SYNE3-202ENST00000553340 ZNF840PA6NDX5 716 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 TNFRSF11BO00300 401 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 CCNKO75909 580 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 STSP08842 583 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 SOX6P35712 828 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 BMPR1AP36894 532 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 IDH2P48735 452 aaKnown RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 NUDT6P53370 316 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 CSTF3Q12996 717 aaKnown RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 TAF1CQ15572 869 aaPredicted RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 ZXDCQ2QGD7 858 aaPredicted RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 PTCHD3Q3KNS1 767 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 SOWAHCQ53LP3 525 aaPredicted RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 RSBN1Q5VWQ0 802 aaPredicted RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 SLX4IPQ5VYV7 408 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 C2orf15Q8WU43 125 aaKnown RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 CENPOQ9BU64 300 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 DOHHQ9BU89 302 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 NUAK2Q9H093 628 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 TP63Q9H3D4 680 aaPredicted RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 RNF167Q9H6Y7 350 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 RMI1Q9H9A7 625 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 RAD18Q9NS91 495 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 FZD4Q9ULV1 537 aa16.96■□□□□ 0.31
SYNE3-202ENST00000553340 CAB39Q9Y376 341 aaPredicted RBP16.96■□□□□ 0.31
SYNE3-202ENST00000553340 ZNF451Q9Y4E5 1061 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms