RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MFSD4BQ5TF39 518 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 KCTD11Q693B1 232 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 BIVMQ86UB2 503 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 PAQR7Q86WK9 346 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 KLHDC8BQ8IXV7 354 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 ZZZ3Q8IYH5 903 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 FAM98AQ8NCA5 519 aaKnown RBP12.16□□□□□ -0.46
VPS29-211ENST00000553128 OR9A4Q8NGU2 314 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 HMGCLL1Q8TB92 370 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 ASZ1Q8WWH4 475 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 RND1Q92730 232 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 ARSGQ96EG1 525 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 ALPK1Q96QP1 1244 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 OR2A5Q96R48 311 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 OLFM1Q99784 485 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 BPIFA3Q9BQP9 254 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 PLCD4Q9BRC7 762 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 DRC3Q9H069 523 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 CDCP1Q9H5V8 836 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 SLC2A6Q9UGQ3 507 aa12.16□□□□□ -0.46
VPS29-211ENST00000553128 TTC7AQ9ULT0 858 aaPredicted RBP12.16□□□□□ -0.46
VPS29-211ENST00000553128 HS6ST1O60243 411 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 PDE9AO76083 593 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 SLC1A1P43005 524 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 MEOX1P50221 254 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 CMPK2Q5EBM0 449 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 TMEM211Q6ICI0 200 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 SUSD1Q6UWL2 747 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 BBS12Q6ZW61 710 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 LDB1Q86U70 411 aaPredicted RBP12.15□□□□□ -0.46
VPS29-211ENST00000553128 PLD3Q8IV08 490 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 KIF2BQ8N4N8 673 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 OR13J1Q8NGT2 312 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 M1APQ8TC57 530 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 ACTL9Q8TC94 416 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 RAD51AP1Q96B01 352 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 SPATA13Q96N96 652 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 RAB11FIP5Q9BXF6 653 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 MMP25Q9NPA2 562 aa12.15□□□□□ -0.46
VPS29-211ENST00000553128 FEZ2Q9UHY8 353 aaPredicted RBP12.15□□□□□ -0.46
VPS29-211ENST00000553128 ANK3Q12955 4377 aaKnown RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 SOWAHDA6NJG2 315 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 SMTNL1A8MU46 457 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 APOC4-APOC2K7ER74 178 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 TFECO14948 347 aaPredicted RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 PSTPIP1O43586 416 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 SUN1O94901 812 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 GOT2P00505 430 aaKnown RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 APOC2P02655 101 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 TFEBP19484 476 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 DNASE1P24855 282 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 TPP2P29144 1249 aaPredicted RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 CMPK1P30085 196 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 GARNL3Q5VVW2 1013 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 PAPD4Q6PIY7 484 aaKnown RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 ZNF534Q76KX8 674 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 RMND5BQ96G75 393 aaPredicted RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 CARD6Q9BX69 1037 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 CLEC4MQ9H2X3 399 aaPredicted RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 TP63Q9H3D4 680 aaPredicted RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 MRPS30Q9NP92 439 aaKnown RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 SPTLC3Q9NUV7 552 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 HCN3Q9P1Z3 774 aa12.14□□□□□ -0.47
VPS29-211ENST00000553128 TSR3Q9UJK0 312 aaKnown RBP12.14□□□□□ -0.47
VPS29-211ENST00000553128 MACROD2A1Z1Q3 448 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 VPS26AO75436 327 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 METTL18O95568 372 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 APOA4P06727 396 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 RBP3P10745 1247 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 XCR1P46094 333 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 DGKQP52824 942 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 IQCB1Q15051 598 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 EXT1Q16394 746 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 SFT2D3Q587I9 215 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 CLEC9AQ6UXN8 241 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 CDC20BQ86Y33 519 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 LIX1LQ8IVB5 337 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 SULF2Q8IWU5 870 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 RHOT2Q8IXI1 618 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 KATNAL2Q8IYT4 538 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 RCOR2Q8IZ40 523 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 CLYBLQ8N0X4 340 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 SLC5A8Q8N695 610 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 HORMAD2Q8N7B1 307 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 OR52N2Q8NGI0 321 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 OR51Q1Q8NH59 317 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 SKA2Q8WVK7 121 aaPredicted RBP12.13□□□□□ -0.47
VPS29-211ENST00000553128 KRT35Q92764 455 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 TSLPQ969D9 159 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 C18orf12Q96KH6 178 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 CCDC138Q96M89 665 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 ZNF778Q96MU6 729 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 MACROD1Q9BQ69 325 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 RBCK1Q9BYM8 510 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 NAT10Q9H0A0 1025 aaKnown RBP12.13□□□□□ -0.47
VPS29-211ENST00000553128 RASSF1Q9NS23 344 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 C19orf25Q9UFG5 118 aaPredicted RBP12.13□□□□□ -0.47
VPS29-211ENST00000553128 PCYOX1Q9UHG3 505 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 ALG6Q9Y672 507 aa12.13□□□□□ -0.47
VPS29-211ENST00000553128 ARHGEF33A8MVX0 844 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms