RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DLGAP1O14490 977 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ACOX3O15254 700 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MAGEB3O15480 346 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 PCDH7O60245 1069 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 VIPP01282 170 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 C9P02748 559 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3HP0C7X1 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 PRR35P0CG20 571 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MAGP20916 626 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 RPS3P23396 243 aaKnown RBP eCLIP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 SLC5A2P31639 672 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MAP2K4P45985 399 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CLCN2P51788 898 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 NR1H2P55055 460 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TP53BP2Q13625 1128 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 UGT8Q16880 541 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 SPDYE7PQ495Y7 208 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 KCTD21Q4G0X4 260 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 COX20Q5RI15 118 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CWF19L1Q69YN2 538 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3GQ6DHY5 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3CQ6IPX1 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 BRAT1Q6PJG6 821 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CEP68Q76N32 757 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 WDR53Q7Z5U6 358 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 REM2Q8IYK8 340 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3Q8IZP1 549 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF555Q8NEP9 628 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TFAP2CQ92754 450 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 COL26A1Q96A83 441 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ZUFSPQ96AP4 578 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ARMC5Q96C12 935 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 THAP11Q96EK4 314 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 REXO5Q96IC2 774 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MRGPRX3Q96LB0 322 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF597Q96LX8 424 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 KCNC2Q96PR1 638 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 FERD3LQ96RJ6 166 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 SMAD5Q99717 465 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CCM2Q9BSQ5 444 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 BRINP2Q9C0B6 783 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 RHBGQ9H310 441 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TMEM245Q9H330 911 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 RMND5AQ9H871 391 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CXorf21Q9HAI6 301 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TPT1P8Q9HAU6 139 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 NTN4Q9HB63 628 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 RC3H2Q9HBD1 1191 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D14Q9P2M4 693 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ABCD2Q9UBJ2 740 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TRPC4Q9UBN4 977 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 STOML2Q9UJZ1 356 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 PADI4Q9UM07 663 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ANAPC1Q9H1A4 1944 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TRBV5-4A0A0C4DH59 114 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TCRBV5S2A0A599 114 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 FAM227AF5H4B4 570 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 J3QRK9 145 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 M0QX08 132 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 SGTAO43765 313 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 PENKP01210 267 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 GPIP06744 558 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 C8GP07360 202 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 AMD1P17707 334 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 GGT1P19440 569 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CAPGP40121 348 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 HSPA13P48723 471 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CLDN2P57739 230 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 RAB8AP61006 207 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 BNIP3Q12983 259 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 DAG1Q14118 895 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF77Q15935 545 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 PRAMEF14Q5SWL7 426 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 LYPLAL1Q5VWZ2 237 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ABRAXAS1Q6UWZ7 409 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 VITQ6UXI7 678 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 R3HCC1LQ7Z5L2 792 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF761Q86XN6 746 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 FAM129CQ86XR2 697 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 DEFB119Q8N690 84 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MIPOL1Q8TD10 442 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TFGQ92734 400 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 NELL1Q92832 810 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 GTPBP3Q969Y2 492 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 FBXL8Q96CD0 374 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF641Q96N77 438 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 FCRL4Q96PJ5 515 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 UGT2B28Q9BY64 529 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MRPS26Q9BYN8 205 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 PBX4Q9BYU1 374 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CD93Q9NPY3 652 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 EQTNQ9NQ60 294 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MIEF1Q9NQG6 463 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MBNL1Q9NR56 388 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 HEBP1Q9NRV9 189 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 THG1LQ9NWX6 298 aaKnown RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 MAGEL2Q9UJ55 1249 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 CCL27Q9Y4X3 112 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 SPAG17Q6Q759 2223 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 SCN8AQ9UQD0 1980 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms