RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 GPR153Q6NV75 609 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TPRG1Q6ZUI0 275 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 DSG4Q86SJ6 1040 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 CBARPQ8N350 705 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 MFSD4AQ8N468 514 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 CHST14Q8NCH0 376 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SETD9Q8NE22 299 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 DYNC2LI1Q8TCX1 351 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 DNASE1L2Q92874 299 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SCRN2Q96FV2 425 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TRMT2BQ96GJ1 504 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 KCNC2Q96PR1 638 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SACM1LQ9NTJ5 587 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ABCB8Q9NUT2 735 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 THUMPD1Q9NXG2 353 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 CFAP97Q9P2B7 532 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 B4GALT6Q9UBX8 382 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SLCO3A1Q9UIG8 710 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 NDRG4Q9ULP0 352 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ABT1Q9ULW3 272 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 B3GNT3Q9Y2A9 372 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 KIAA1549LQ6ZVL6 1849 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 PLXNA2O75051 1894 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 COL4A6Q14031 1691 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM229AB2RXF0 380 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 M0R129 80 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 PQBP1O60828 265 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 EPN2O95208 641 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ABCB1P08183 1280 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 OR56A5P0C7T3 313 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GPX2P18283 190 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 FPR1P21462 350 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 PRPH2P23942 346 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GABRR2P28476 465 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 C21orf33P30042 268 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 HLA-FP30511 346 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TGFBR2P37173 567 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ARHGDIAP52565 204 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 RPP38P78345 283 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 IRF8Q02556 426 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ABRQ12979 859 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GAB1Q13480 694 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 KEAP1Q14145 624 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GGTA1PQ4G0N0 100 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 IQCCQ4KMZ1 466 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 XKR6Q5GH73 641 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SPOUT1Q5T280 376 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SYT6Q5T7P8 510 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ASTLQ6HA08 431 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF852Q6ZMS4 543 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 DPY19L3Q6ZPD9 716 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 CBLL1Q75N03 491 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GAREM2Q75VX8 874 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GPR155Q7Z3F1 870 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TSEN54Q7Z6J9 526 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ADCK1Q86TW2 530 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ENTHD1Q8IYW4 607 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 L3MBTL4Q8NA19 623 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GPR156Q8NFN8 814 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 CD99L2Q8TCZ2 262 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 PROX1Q92786 737 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 MED8Q96G25 268 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SAMD11Q96NU1 681 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 HERC2P3Q9BVR0 1158 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TMUB1Q9BVT8 246 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 MROQ9BYG7 248 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SUV39H2Q9H5I1 410 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TPT1P8Q9HAU6 139 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ZBTB20Q9HC78 741 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 PRM3Q9NNZ6 103 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 HMG20AQ9NP66 347 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 DNAJC11Q9NVH1 559 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SCN3BQ9NY72 215 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 AP3M1Q9Y2T2 418 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 TPRKBQ9Y3C4 175 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 INSL5Q9Y5Q6 135 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 GABRR3A8MPY1 467 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 GFYI3L273 518 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SLC22A1O15245 554 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RGS10O43665 173 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SGTAO43765 313 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 NUAK1O60285 661 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 AOC2O75106 756 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 GCM2O75603 506 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 GBAP04062 536 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 CBSLP0DN79 551 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 ATP1B2P14415 290 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 CD36P16671 472 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 PRPS1L1P21108 318 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RRM2P31350 389 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 CBSP35520 551 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 LIPAP38571 399 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 OR1E2P47887 323 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 NUDT6P53370 316 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RAE1P78406 368 aaKnown RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 KCNJ10P78508 379 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SP3Q02447 781 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 NPRL3Q12980 569 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms