RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 THSD7AQ9UPZ6 1657 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 ITGBL1O95965 494 aaPredicted RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 BCHEP06276 602 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 GUCA1AP43080 201 aaPredicted RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 DOC2AQ14183 400 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 CTC1Q2NKJ3 1217 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SPIN4Q56A73 249 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 FAM180BQ6P0A1 224 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 NPAS3Q8IXF0 933 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 PACRGLQ8N7B6 248 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 HM13Q8TCT9 377 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 BORCS5Q969J3 196 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 PYURFQ96I23 114 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 RPF2Q9H7B2 306 aaKnown RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 DNAAF2Q9NVR5 837 aaKnown RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 BTBD3Q9Y2F9 522 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 C8orf89P0DMQ9 161 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SAGP10523 405 aaPredicted RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 LAMP2P13473 410 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 DDX6P26196 483 aaKnown RBP eCLIP15.78■□□□□ 0.12
CUX1-213ENST00000549414 ZNF140P52738 457 aaPredicted RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 MXD1Q05195 221 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 ADGRG6Q86SQ4 1221 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 TCEAL8Q8IYN2 117 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 GPR135Q8IZ08 494 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 FIBINQ8TAL6 211 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SLC5A11Q8WWX8 675 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SERHL2Q9H4I8 314 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SERHLQ9NQF3 203 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 TVP23BQ9NYZ1 205 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 CCNDBP1O95273 360 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 FESP07332 822 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 ELK4P28324 431 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 CDK6Q00534 326 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 PIGFQ07326 219 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 STX4Q12846 297 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SLC8B1Q6J4K2 584 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 POMZP3Q6PJE2 187 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 ARMCX6Q7L4S7 300 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 NUDT13Q86X67 352 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 CNTN4Q8IWV2 1026 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SLC39A11Q8N1S5 342 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 DEFB119Q8N690 84 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 ENKURQ8TC29 256 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 KLF16Q9BXK1 252 aaPredicted RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 PCDHGB3Q9Y5G1 929 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 A0A0J9YVX5 310 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 TMCC2O75069 709 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 PRG2P13727 222 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 HOXB6P17509 224 aaKnown RBP15.77■□□□□ 0.12
CUX1-213ENST00000549414 TARDBPQ13148 414 aaKnown RBP eCLIP15.77■□□□□ 0.129e-7■■■■□ 26.1
CUX1-213ENST00000549414 OR9A1PQ8NGU1 263 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 HTRA1Q92743 480 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 TP53INP1Q96A56 240 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 TCEAL4Q96EI5 215 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 CMTM6Q9NX76 183 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 GALNT8Q9NY28 637 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 GMPR2Q9P2T1 348 aaKnown RBP15.77■□□□□ 0.12
CUX1-213ENST00000549414 SOCS2O14508 198 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 CDH3P22223 829 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 JAK1P23458 1154 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 CST5P28325 142 aaPredicted RBP15.77■□□□□ 0.12
CUX1-213ENST00000549414 ALDH3A2P51648 485 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 ANGPT1Q15389 498 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 NPTX1Q15818 432 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 MINDY4Q4G0A6 757 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 PLEKHS1Q5SXH7 462 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.77■□□□□ 0.128e-7■■■■■ 33
CUX1-213ENST00000549414 IER5LQ5T953 404 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 NEK5Q6P3R8 708 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 CEACAM20Q6UY09 585 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 LSMEM2Q8N112 164 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 CACTIN-AS1Q8N1I8 211 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 MINDY1Q8N5J2 469 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 DNAJB8Q8NHS0 232 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 STON2Q8WXE9 905 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 ZNF334Q9HCZ1 680 aaPredicted RBP15.77■□□□□ 0.12
CUX1-213ENST00000549414 MARCH5Q9NX47 278 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 TRPS1Q9UHF7 1281 aa15.77■□□□□ 0.12
CUX1-213ENST00000549414 AIREO43918 545 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 KCNAB2Q13303 367 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 BIKQ13323 160 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 SLC9A5Q14940 896 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 DHCR24Q15392 516 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 UAP1L1Q3KQV9 507 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 ZZZ3Q8IYH5 903 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 KCNN1Q92952 543 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 PRICKLE1Q96MT3 831 aaPredicted RBP15.77■□□□□ 0.11
CUX1-213ENST00000549414 TTLL2Q9BWV7 592 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 ETAA1Q9NY74 926 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 TMED5Q9Y3A6 229 aa15.77■□□□□ 0.11
CUX1-213ENST00000549414 OAS3Q9Y6K5 1087 aaKnown RBP15.77■□□□□ 0.11
CUX1-213ENST00000549414 SSC5DA1L4H1 1573 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 A0A1W2PPW3 197 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 TRBC2A0A5B9 178 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 RTCAO00442 366 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 CA3P07451 260 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 EPCAMP16422 314 aa15.76■□□□□ 0.11
CUX1-213ENST00000549414 AZGP1P25311 298 aaKnown RBP15.76■□□□□ 0.11
CUX1-213ENST00000549414 DNAJA1P31689 397 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms