RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DOLPP1Q86YN1 238 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 VSTM4Q8IW00 320 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 MPP5Q8N3R9 675 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 ACBD4Q8NC06 268 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 CHDHQ8NE62 594 aaPredicted RBP15.99■□□□□ 0.15
VPS29-204ENST00000548259 OR9A1PQ8NGU1 263 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 M1APQ8TC57 530 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 SCMH1Q96GD3 660 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 TREX2Q9BQ50 279 aaPredicted RBP15.99■□□□□ 0.15
VPS29-204ENST00000548259 VN1R1Q9GZP7 353 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 SLC2A6Q9UGQ3 507 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 FOXS1O43638 330 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 SP1P08047 785 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 ABATP80404 500 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 PRDX1Q06830 199 aaKnown RBP15.98■□□□□ 0.15
VPS29-204ENST00000548259 ACTN3Q08043 901 aaPredicted RBP15.98■□□□□ 0.15
VPS29-204ENST00000548259 CCSMST1Q4G0I0 132 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 FCRLBQ6BAA4 426 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 SPINK14Q6IE38 97 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 SLC25A25Q6KCM7 469 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 ZNF534Q76KX8 674 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 GALNTL5Q7Z4T8 443 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 PAQR7Q86WK9 346 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 CRLF3Q8IUI8 442 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 PPHLN1Q8NEY8 458 aaKnown RBP15.98■□□□□ 0.15
VPS29-204ENST00000548259 SIGLEC12Q96PQ1 595 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 OR2A5Q96R48 311 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 PANX2Q96RD6 677 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 TRIM51Q9BSJ1 452 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 MMP25Q9NPA2 562 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 ANKRD10Q9NXR5 420 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 PCYOX1Q9UHG3 505 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 PCDHA13Q9Y5I0 950 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 ABCA2Q9BZC7 2435 aa15.98■□□□□ 0.15
VPS29-204ENST00000548259 H3BMM5 538 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 CD3EAPO15446 510 aaKnown RBP15.97■□□□□ 0.15
VPS29-204ENST00000548259 ATP5DP30049 168 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 FDFT1P37268 417 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 MAT1AQ00266 395 aaKnown RBP15.97■□□□□ 0.15
VPS29-204ENST00000548259 FASTKQ14296 549 aaKnown RBP15.97■□□□□ 0.15
VPS29-204ENST00000548259 MAPKAPK3Q16644 382 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 SYT16Q17RD7 645 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 CES4AQ5XG92 561 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 ICE2Q659A1 982 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.97■□□□□ 0.15
VPS29-204ENST00000548259 TMEM200AQ86VY9 491 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 LGI4Q8N135 537 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 OTUD6BQ8N6M0 293 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 TMEM125Q96AQ2 219 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 DMRTA2Q96SC8 542 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 LPAR4Q99677 370 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 OLFM1Q99784 485 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 ZNF559Q9BR84 538 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 TMEM121Q9BTD3 319 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 LRFN1Q9P244 771 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 RUVBL2Q9Y230 463 aaKnown RBP15.97■□□□□ 0.15
VPS29-204ENST00000548259 TCAF1Q9Y4C2 921 aa15.97■□□□□ 0.15
VPS29-204ENST00000548259 NIPBLQ6KC79 2804 aaeCLIP15.96■□□□□ 0.15
VPS29-204ENST00000548259 IGHV3-20A0A0C4DH32 117 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 FAM221AA4D161 298 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 GABRR3A8MPY1 467 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 WISP2O76076 250 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 IPO7O95373 1038 aaKnown RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 NSA2O95478 260 aaKnown RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 CATP04040 527 aaKnown RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 RPS3P23396 243 aaKnown RBP eCLIP15.96■□□□□ 0.154e-6■■■■□ 22.8
VPS29-204ENST00000548259 STIP1P31948 543 aaKnown RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 CYLC1P35663 651 aaPredicted RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 PPP2R2AP63151 447 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 SEMA3AQ14563 771 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 SUSD1Q6UWL2 747 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 C3P1Q6ZMU1 363 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 LANCL3Q6ZV70 420 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 SDCCAG8Q86SQ7 713 aaPredicted RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 LDB1Q86U70 411 aaPredicted RBP15.96■□□□□ 0.15
VPS29-204ENST00000548259 SIAH3Q8IW03 269 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 CCDC170Q8IYT3 715 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 POGLUT1Q8NBL1 392 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 HES7Q9BYE0 225 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 P2RY12Q9H244 342 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 TAC3Q9UHF0 121 aa15.96■□□□□ 0.15
VPS29-204ENST00000548259 NCOA6Q14686 2063 aaPredicted RBP15.95■□□□□ 0.14
VPS29-204ENST00000548259 USP27XA6NNY8 438 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 NDC80O14777 642 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 SLC25A12O75746 678 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 MATN4O95460 622 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 ERGP11308 486 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 CHRNB4P30926 498 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 PTGS2P35354 604 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 XCR1P46094 333 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 PNLIPRP1P54315 467 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 EIF3BP55884 814 aaKnown RBP15.95■□□□□ 0.14
VPS29-204ENST00000548259 YBX1P67809 324 aaKnown RBP15.95■□□□□ 0.14
VPS29-204ENST00000548259 THEMIS2Q5TEJ8 643 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 ZNF425Q6IV72 752 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 NCCRP1Q6ZVX7 275 aaPredicted RBP15.95■□□□□ 0.14
VPS29-204ENST00000548259 ANKRD37Q7Z713 158 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 UBL4BQ8N7F7 174 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 OR9A4Q8NGU2 314 aa15.95■□□□□ 0.14
VPS29-204ENST00000548259 OR51Q1Q8NH59 317 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms