RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 OC90Q02509 493 aaPredicted RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 SEMA3AQ14563 771 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 TMED2Q15363 201 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 MEP1AQ16819 746 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 PARP6Q2NL67 630 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 RNFT1Q5M7Z0 435 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 GARNL3Q5VVW2 1013 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 CEP128Q6ZU80 1094 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 DMRTC2Q8IXT2 367 aaPredicted RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 SHISA5Q8N114 240 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 MARVELD2Q8N4S9 558 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 RAB42Q8N4Z0 105 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 OR13J1Q8NGT2 312 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 CCDC42Q96M95 316 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 GBP4Q96PP9 640 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 TTC1Q99614 292 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 FOXC2Q99958 501 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 ZNF559Q9BR84 538 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 PLCD4Q9BRC7 762 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 TSSK1BQ9BXA7 367 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 DRC3Q9H069 523 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 GSX1Q9H4S2 264 aaPredicted RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 NHEJ1Q9H9Q4 299 aaPredicted RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 KCNK13Q9HB14 408 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 ZNHIT6Q9NWK9 470 aaKnown RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 SLC2A6Q9UGQ3 507 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 INTUQ9ULD6 942 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 ACANP16112 2415 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 FBN3Q75N90 2809 aa12.02□□□□□ -0.48
SCAF11-208ENST00000546534 GABRR3A8MPY1 467 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 PJA2O43164 708 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 VPS26AO75436 327 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 NEURL1O76050 574 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 TOXO94900 526 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 HADHBP55084 474 aaKnown RBP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 TFF3Q07654 80 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 NAA25Q14CX7 972 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 SLC25A25Q6KCM7 469 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 AFTPHQ6ULP2 937 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF534Q76KX8 674 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 PAQR7Q86WK9 346 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 FAM98AQ8NCA5 519 aaKnown RBP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 CHDHQ8NE62 594 aaPredicted RBP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 OR4L1Q8NH43 312 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 LILRB4Q8NHJ6 448 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 SKA2Q8WVK7 121 aaPredicted RBP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 OR2A5Q96R48 311 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 UCK2Q9BZX2 261 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 CCM2LQ9NUG4 571 aaPredicted RBP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 R3HDM2Q9Y2K5 976 aaKnown RBP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.02□□□□□ -0.49
SCAF11-208ENST00000546534 HRH3Q9Y5N1 445 aa12.02□□□□□ -0.49
SCAF11-208ENST00000546534 IGKV1-8A0A0C4DH67 115 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 OR2W5A6NFC9 320 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 SOWAHDA6NJG2 315 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 FAM90A27PA6NNH2 459 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 SUN1O94901 812 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF24P17028 368 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 MSX1P28360 303 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 PTGER1P34995 402 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 PPP2R2AP63151 447 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 MAPKAPK3Q16644 382 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 MINDY4Q4G0A6 757 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 MFSD4BQ5TF39 518 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 ANKRD37Q7Z713 158 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 LDB1Q86U70 411 aaPredicted RBP12.01□□□□□ -0.49
SCAF11-208ENST00000546534 TAB3Q8N5C8 712 aaPredicted RBP12.01□□□□□ -0.49
SCAF11-208ENST00000546534 CPSF7Q8N684 471 aaKnown RBP12.01□□□□□ -0.49
SCAF11-208ENST00000546534 OR9A4Q8NGU2 314 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 OR6P1Q8NGX9 317 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 GSDMBQ8TAX9 411 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 FAM57AQ8TBR7 257 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 ASB5Q8WWX0 329 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF778Q96MU6 729 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 OSBPL8Q9BZF1 889 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 MRPS30Q9NP92 439 aaKnown RBP12.01□□□□□ -0.49
SCAF11-208ENST00000546534 SPATA7Q9P0W8 599 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 C19orf25Q9UFG5 118 aaPredicted RBP12.01□□□□□ -0.49
SCAF11-208ENST00000546534 KCNN3Q9UGI6 736 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 RNF6Q9Y252 685 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 EFR3BQ9Y2G0 817 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 MRFAP1Q9Y605 127 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 GTF3C1Q12789 2109 aa12.01□□□□□ -0.49
SCAF11-208ENST00000546534 GOLGA6L22H0YM25 854 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 P2RX6O15547 441 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 PHF2O75151 1096 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 TPOP07202 933 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 HOXD4P09016 255 aaPredicted RBP12□□□□□ -0.49
SCAF11-208ENST00000546534 CHRNB4P30926 498 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 PTGS2P35354 604 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 PPARGP37231 505 aaPredicted RBP12□□□□□ -0.49
SCAF11-208ENST00000546534 CCNFP41002 786 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 FAM53BQ14153 422 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 EXT1Q16394 746 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 FASTKD1Q53R41 847 aaKnown RBP12□□□□□ -0.49
SCAF11-208ENST00000546534 TSTD2Q5T7W7 516 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF468Q5VIY5 522 aaPredicted RBP12□□□□□ -0.49
SCAF11-208ENST00000546534 CES4AQ5XG92 561 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF425Q6IV72 752 aa12□□□□□ -0.49
SCAF11-208ENST00000546534 SUSD1Q6UWL2 747 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms