RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SREBF2Q12772 1141 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 DOC2AQ14183 400 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 COLEC12Q5KU26 742 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 HMGN2P46Q86SG4 172 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 CADM3Q8N126 398 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ZBTB8BQ8NAP8 495 aaPredicted RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 MAGED4Q96JG8 741 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ZNF347Q96SE7 839 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 SUV39H2Q9H5I1 410 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 REEP1Q9H902 201 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 HCFC1R1Q9NWW0 138 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 USE1Q9NZ43 259 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ITM2BQ9Y287 266 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 TRBV5-4A0A0C4DH59 114 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 NEDD8-MDP1E9PL57 170 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 WBP4O75554 376 aaKnown RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 RPS3P23396 243 aaKnown RBP eCLIP14.54□□□□□ -0.08
USP28-214ENST00000545540 GTF2E2P29084 291 aaKnown RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 SLC19A1P41440 591 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 CLK1P49759 484 aaKnown RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 ACSM2AQ08AH3 577 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 TUBA3CQ13748 450 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ACSM2BQ68CK6 577 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 HSD11B1LQ7Z5J1 315 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ANKRD13BQ86YJ7 626 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ASB11Q8WXH4 323 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 LGALS12Q96DT0 336 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 FEVQ99581 238 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ACAT2Q9BWD1 397 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 RERGLQ9H628 205 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ZDHHC4Q9NPG8 344 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 SCN3BQ9NY72 215 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 GPR83Q9NYM4 423 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ZNF229Q9UJW7 825 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 CCNDBP1O95273 360 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 POU1F1P28069 291 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 CTSCP53634 463 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 LRIF1Q5T3J3 769 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 SLC22A16Q86VW1 577 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 PLD3Q8IV08 490 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 NELL1Q92832 810 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 GTPBP3Q969Y2 492 aaKnown RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 CIDECQ96AQ7 238 aaPredicted RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 TMEM169Q96HH4 297 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 SORBS1Q9BX66 1292 aaKnown RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 ACOT13Q9NPJ3 140 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 DNAJC11Q9NVH1 559 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 WDR70Q9NW82 654 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 KCNE1BA0A087WTH5 132 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 RGS10O43665 173 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 JRKO75564 520 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 OR56A5P0C7T3 313 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 ITIH1P19827 911 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 RPS3AP61247 264 aaKnown RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 DUOXA1Q1HG43 343 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 PLPP6Q8IY26 295 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 OR9Q2Q8NGE9 314 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 VOPP1Q96AW1 172 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 LINC00597Q9H2U6 94 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 SGK2Q9HBY8 427 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 SAMD4AQ9UPU9 718 aaKnown RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 MAP4K5Q9Y4K4 846 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 TRIM43BA6NCK2 446 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 WNT9AO14904 365 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 SLC16A6O15403 523 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 TBX1O43435 398 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 SLC16A8O95907 504 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 TGFB1P01137 390 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 CHRM5P08912 532 aaPredicted RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 ANXA4P09525 319 aaPredicted RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 IMPDH2P12268 514 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 GRK5P34947 590 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 CAMK2GQ13555 558 aaPredicted RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 MAD2L1BPQ15013 274 aaPredicted RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 KDM4DQ6B0I6 523 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 TPRG1Q6ZUI0 275 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 SCRN2Q96FV2 425 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 VPS29Q9UBQ0 182 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 SH2B3Q9UQQ2 575 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 LINC00854A0A1B0GVQ3 168 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 TSPAN6O43657 245 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 ATP1B2P14415 290 aaPredicted RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 ST13P50502 369 aaKnown RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 CDH12P55289 794 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 NPRL3Q12980 569 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 ENTHD1Q8IYW4 607 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 ZHX1-C8orf76Q96EF9 292 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 OR4K3Q96R72 315 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 CORO1BQ9BR76 489 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 ASPSCR1Q9BZE9 553 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 DNMT3BQ9UBC3 853 aaKnown RBP14.53□□□□□ -0.08
USP28-214ENST00000545540 PRKAB1Q9Y478 270 aa14.53□□□□□ -0.08
USP28-214ENST00000545540 GRXCR2A6NFK2 248 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 ARHGEF33A8MVX0 844 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 SCN2BO60939 215 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 STSP08842 583 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 METAP1P53582 386 aa14.52□□□□□ -0.08
USP28-214ENST00000545540 THOC6Q86W42 341 aaKnown RBP14.52□□□□□ -0.08
USP28-214ENST00000545540 P3H2Q8IVL5 708 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms