RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TGM4P49221 684 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 INPP1P49441 399 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PTPN5P54829 565 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 TAS2R39P59534 338 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 NPRL3Q12980 569 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ZNF460Q14592 562 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 LGALSLQ3ZCW2 172 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 FAM76BQ5HYJ3 339 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ZNF425Q6IV72 752 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 C12orf40Q86WS4 652 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ZNF565Q8N9K5 539 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 BVESQ8NE79 360 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 GMCL1P1Q8NEA9 526 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP3-203ENST00000538686 SLC5A11Q8WWX8 675 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 RAD51AP1Q96B01 352 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 OTULINQ96BN8 352 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 COQ10AQ96MF6 247 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PDCD10Q9BUL8 212 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 TAPBPLQ9BX59 468 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 CDCA4Q9BXL8 241 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 MS4A7Q9GZW8 240 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 ANKRA2Q9H9E1 313 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ABCB9Q9NP78 766 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 MPP6Q9NZW5 540 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 KCMF1Q9P0J7 381 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SLAMF8Q9P0V8 285 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 HCN3Q9P1Z3 774 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 IKZF3Q9UKT9 509 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 CSADQ9Y600 493 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 CDH10Q9Y6N8 788 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 C7orf66A4D0T2 115 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 LZTS3O60299 673 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 HLA-DOAP06340 250 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 FCER2P06734 321 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 F7P08709 466 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 TSPAN8P19075 237 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ITGB7P26010 798 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ARL4AP40617 200 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PXNP49023 591 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 JAK3P52333 1124 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 MTPNP58546 118 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SPP2Q13103 211 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 FCN2Q15485 313 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SURF1Q15526 300 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 TSTQ16762 297 aaKnown RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 UNC50Q53HI1 259 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 OR2T5Q6IEZ7 315 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 OR6B2Q6IFH4 312 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PYHIN1Q6K0P9 492 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 C17orf107Q6ZR85 190 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PID1Q7Z2X4 250 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SPATA2LQ8IUW3 424 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 SLC34A3Q8N130 599 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ZNF655Q8N720 491 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 OR2T29Q8NH02 315 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 CREB3L4Q8TEY5 395 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 BSNDQ8WZ55 320 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 LPPQ93052 612 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SLC25A46Q96AG3 418 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PYURFQ96I23 114 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 TMEM209Q96SK2 561 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 LGMNQ99538 433 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 CNPPD1Q9BV87 410 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 GABARAPL3Q9BY60 117 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ZCCHC4Q9H5U6 513 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 MARK1Q9P0L2 795 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 KLHL8Q9P2G9 620 aaPredicted RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 ZNF222Q9UK12 451 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 ROBO1Q9Y6N7 1651 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 TRAV19A0A0A6YYK7 116 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PRAMEF33A0A0G2JMD5 474 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 A0A0G2JPF8 293 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 A0A1B0GW55 424 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 RAB19A4D1S5 217 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 HNRNPCL3B7ZW38 293 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 SLC28A1O00337 649 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PSMD3O43242 534 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PRAMEF10O60809 474 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 NDUFS6O75380 124 aaKnown RBP12.05□□□□□ -0.48
USP3-203ENST00000538686 OR4F21O95013 312 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 ITGBL1O95965 494 aaPredicted RBP12.05□□□□□ -0.48
USP3-203ENST00000538686 GLAP06280 429 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DUX4L2P0CJ85 424 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DUX4L3P0CJ86 424 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DUX4L4P0CJ87 422 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DUX4L5P0CJ88 424 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DUX4L6P0CJ89 424 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DUX4L7P0CJ90 424 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 HNRNPCL4P0DMR1 293 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 CKMT1AP12532 417 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 CPB1P15086 417 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PSMA1P25786 263 aaKnown RBP12.05□□□□□ -0.48
USP3-203ENST00000538686 HOXA9P31269 272 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DIO3P55073 304 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PRMT2P55345 433 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PPP3R1P63098 170 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 SH3BP2P78314 561 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 PLIN5Q00G26 463 aa12.05□□□□□ -0.48
USP3-203ENST00000538686 DSC1Q08554 894 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms