RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-205	ENST00000535375	CDCA3	Q99618	268 aa	Predicted RBP	4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	MTHFD2L	Q9H903	347 aa	Predicted RBP	4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	XAB2	Q9HCS7	855 aa	Known RBP	4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	NKIRAS2	Q9NYR9	191 aa		4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	LNPEP	Q9UIQ6	1025 aa		4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	ELF5	Q9UKW6	265 aa	Predicted RBP	4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	WIPI2	Q9Y4P8	454 aa		4.23	□□□□□ -1.73
PRKDC-205	ENST00000535375	TRBV4-1	A0A0J9YWV2	114 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375		A0A1W2PPK0	400 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	KRTAP9-6	A8MVA2	160 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	EPM2A	B3EWF7	344 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	DIAPH2	O60879	1101 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	CEACAM4	O75871	244 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	CPT2	P23786	658 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	OR3A2	P47893	321 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	NOV	P48745	357 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	CSRP3	P50461	194 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	PAX8	Q06710	450 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	TCTEX1D4	Q5JR98	221 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	CST9LP1	Q5W188	147 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	LCLAT1	Q6UWP7	414 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	OR4D10	Q8NGI6	311 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	SPSB1	Q96BD6	273 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	PGAP3	Q96FM1	320 aa	Predicted RBP	4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	PGM2	Q96G03	612 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	C2orf48	Q96LS8	159 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	CFAP57	Q96MR6	1250 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	ZNF558	Q96NG5	402 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	BTBD9	Q96Q07	612 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	LGMN	Q99538	433 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	SOST	Q9BQB4	213 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	CENPO	Q9BU64	300 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	RAB11FIP5	Q9BXF6	653 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	TRIM6	Q9C030	488 aa	Predicted RBP	4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	SDCBP2	Q9H190	292 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	GPN1	Q9HCN4	374 aa	Predicted RBP	4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	DNAJC4	Q9NNZ3	241 aa		4.22	□□□□□ -1.73
PRKDC-205	ENST00000535375	MYH15	Q9Y2K3	1946 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	C2CD4D	B7Z1M9	353 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	PLOD3	O60568	738 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	ATP6AP2	O75787	350 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	HPR	P00739	348 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	IGHV3-13	P01766	116 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	IL11	P20809	199 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	ACHE	P22303	614 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	AADAC	P22760	399 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	ALDH1B1	P30837	517 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	SFTPD	P35247	375 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	CAPG	P40121	348 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	PGF	P49763	221 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	DCDC1	P59894	354 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	IRX4	P78413	519 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	DHODH	Q02127	395 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	LY6D	Q14210	128 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	FAM189A2	Q15884	450 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	CDC20B	Q86Y33	519 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	RCOR2	Q8IZ40	523 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	GPC2	Q8N158	579 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	XXYLT1	Q8NBI6	393 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	LRRC15	Q8TF66	581 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	ATXN7L3B	Q96GX2	97 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375	LRRC3B	Q96PB8	259 aa		4.21	□□□□□ -1.74
PRKDC-205	ENST00000535375		A8MXK9	166 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	SLCO2B1	O94956	709 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	ADRB2	P07550	413 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	CAPN2	P17655	700 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	OXTR	P30559	389 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	PTGER3	P43115	390 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	DLK1	P80370	383 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	RIG	Q13278	110 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	ERC1	Q8IUD2	1116 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375		Q8N377	158 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	GBP7	Q8N8V2	638 aa	Predicted RBP	4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	KLHL5	Q96PQ7	755 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	SNX25	Q9H3E2	840 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	ACTL8	Q9H568	366 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	RNF121	Q9H920	327 aa		4.2	□□□□□ -1.74
PRKDC-205	ENST00000535375	KAT6B	Q8WYB5	2073 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	SLC1A7	O00341	560 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	SURF4	O15260	269 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	GGPS1	O95749	300 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	FYN	P06241	537 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	ERCC2	P18074	760 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	HSPA4	P34932	840 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	UBASH3A	P57075	661 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	CACNG1	Q06432	222 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	COX10	Q12887	443 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	ZNF774	Q6NX45	483 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	IL17REL	Q6ZVW7	336 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	KRT74	Q7RTS7	529 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	ZFAND4	Q86XD8	727 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	ANKRD13C	Q8N6S4	541 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	TCEANC	Q8N8B7	351 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	PI4KAP1	Q8N8J0	262 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	OR4C15	Q8NGM1	316 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	C11orf45	Q8TAV5	145 aa		4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	CNRIP1	Q96F85	164 aa	Predicted RBP	4.19	□□□□□ -1.74
PRKDC-205	ENST00000535375	OVOL2	Q9BRP0	275 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms