RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 FAM83EQ2M2I3 478 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 CATSPEREQ5SY80 951 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 FAM198BQ6UWH4 519 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 TCAIMQ8N3R3 496 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 ARHGEF39Q8N4T4 335 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 PDPRQ8NCN5 879 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 RHEBL1Q8TAI7 183 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 SLC5A11Q8WWX8 675 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 THAP11Q96EK4 314 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 ATOH8Q96SQ7 321 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 SARGQ9BW04 601 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 ACTL8Q9H568 366 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 SLC22A11Q9NSA0 550 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 CD274Q9NZQ7 290 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 FETUBQ9UGM5 382 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 FER1L5A0AVI2 2057 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 A0A1B0GX78 115 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 FEZF1A0PJY2 475 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 CCDC189A1A4V9 331 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TRIM49D1C9J1S8 452 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 KERAO60938 352 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 SNRPAP09012 282 aaKnown RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 RPS18P62269 152 aaKnown RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 NFKB2Q00653 900 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 HKDC1Q2TB90 917 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 NKAIN1Q4KMZ8 207 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TAF1BQ53T94 588 aaPredicted RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TAOK1Q7L7X3 1001 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 VN1R4Q7Z5H5 301 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 PLD6Q8N2A8 252 aaKnown RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 CSNK1A1LQ8N752 337 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 ENDOVQ8N8Q3 282 aaKnown RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TTC9Q92623 222 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 RERGQ96A58 199 aaPredicted RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TM4SF19Q96DZ7 209 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TMEM79Q9BSE2 394 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 VPS11Q9H270 941 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 RALYQ9UKM9 306 aaKnown RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 RUVBL1Q9Y265 456 aaKnown RBP18.95■□□□□ 0.62
CPSF1-209ENST00000532725 KCNE2Q9Y6J6 123 aa18.95■□□□□ 0.62
CPSF1-209ENST00000532725 TXNDC9O14530 226 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 MAP2K7O14733 419 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 P2RX6O15547 441 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 WDR47O94967 919 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 ITGB2P05107 769 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 FURINP09958 794 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 MTHFD2P13995 350 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 BCL6P41182 706 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 VSNL1P62760 191 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 ERV3-1Q14264 604 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 NCF4Q15080 339 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 LGSNQ5TDP6 509 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 MRPL14Q6P1L8 145 aaKnown RBP18.94■□□□□ 0.62
CPSF1-209ENST00000532725 C16orf46Q6P387 395 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 PCSK4Q6UW60 755 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 NXPE4Q6UWF7 544 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 TIFABQ6ZNK6 161 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 DTWD1Q8N5C7 304 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 ESAMQ96AP7 390 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 C10orf90Q96M02 699 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 TSNARE1Q96NA8 513 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 NDOR1Q9UHB4 597 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 TCFL5Q9UL49 500 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 DYRK1BQ9Y463 629 aa18.94■□□□□ 0.62
CPSF1-209ENST00000532725 STK16O75716 305 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 KLF7O75840 302 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-209ENST00000532725 PRKAR1AP10644 381 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 GRK3P35626 688 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 GLRBP48167 497 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 MEF2AQ02078 507 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-209ENST00000532725 CDC20Q12834 499 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 TBR1Q16650 682 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 MUM1Q2TAK8 710 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 LINC00303Q3SY05 128 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 FBXO48Q5FWF7 155 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 ATP1A1-AS1Q5TC04 95 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 GARNL3Q5VVW2 1013 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 MLIPQ5VWP3 458 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 SYVN1Q86TM6 617 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 MFSD9Q8NBP5 474 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 ZNF740Q8NDX6 193 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-209ENST00000532725 C17orf62Q9BQA9 187 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 SPNS1Q9H2V7 528 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 CNOT10Q9H9A5 744 aaKnown RBP18.93■□□□□ 0.62
CPSF1-209ENST00000532725 PELI2Q9HAT8 420 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 ZNF358Q9NW07 568 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 WWOXQ9NZC7 414 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 NUDT4Q9NZJ9 180 aa18.93■□□□□ 0.62
CPSF1-209ENST00000532725 IFT80Q9P2H3 777 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-209ENST00000532725 TRBC2A0A5B9 178 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 C9J4A7 227 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 UBXN8O00124 270 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 CNOT3O75175 753 aaKnown RBP18.92■□□□□ 0.62
CPSF1-209ENST00000532725 RFPL1O75677 317 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 IPO13O94829 963 aaKnown RBP18.92■□□□□ 0.62
CPSF1-209ENST00000532725 COL6A2P12110 1019 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 GNAZP19086 355 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 OR1D4P47884 311 aa18.92■□□□□ 0.62
CPSF1-209ENST00000532725 HSPA7P48741 367 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms