RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CITED4Q96RK1 184 aa13.44□□□□□ -0.26
SYNPO-205ENST00000522122 SYT17Q9BSW7 474 aa13.44□□□□□ -0.26
SYNPO-205ENST00000522122 RIOK2Q9BVS4 552 aaKnown RBP13.44□□□□□ -0.26
SYNPO-205ENST00000522122 SPIN1Q9Y657 262 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-205ENST00000522122 FOCADQ5VW36 1801 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 LRRC14BA6NHZ5 514 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CPSF4LA6NMK7 179 aaKnown RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 MCIDASD6RGH6 385 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ACOX3O15254 700 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 DIRAS1O95057 198 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ATP1B2P14415 290 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 FDXRP22570 491 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 MAGEA11P43364 429 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 KHKP50053 298 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 SOX4Q06945 474 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 FBXO43Q4G163 708 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 TXNDC8Q6A555 127 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 BLOC1S3Q6QNY0 202 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 UBE2J2Q8N2K1 259 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 FAM110BQ8TC76 370 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 TMIGD2Q96BF3 282 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ITPAQ9BY32 194 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 SMURF2Q9HAU4 748 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 PCDHB3Q9Y5E6 796 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 QSER1Q2KHR3 1735 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 A0A1W2PRU2 124 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 INMTO95050 263 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 SNAP29O95721 258 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 TFAP2AP05549 437 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ELK4P28324 431 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 XKP51811 444 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ADAM17P78536 824 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CDK6Q00534 326 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 SEMA3AQ14563 771 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 PTGES3Q15185 160 aaKnown RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CAMK1GQ96NX5 476 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 THUMPD1Q9NXG2 353 aaKnown RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 COMMD3Q9UBI1 195 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NUMBLQ9Y6R0 609 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 PMF1-BGLAPU3KQ54 211 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ORC5O43913 435 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 MATN4O95460 622 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CSTF2P33240 577 aaKnown RBP eCLIP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NUDT6P53370 316 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 BRAT1Q6PJG6 821 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CARM1Q86X55 608 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NATD1Q8N6N6 113 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ING5Q8WYH8 240 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NCSTNQ92542 709 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 MCCC1Q96RQ3 725 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ZSCAN5AQ9BUG6 496 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NPLQ9BXD5 320 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CD244Q9BZW8 370 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 ANKHQ9HCJ1 492 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NECTIN3Q9NQS3 549 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 AIG1Q9NVV5 245 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CA12O43570 354 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 DNAJB5O75953 348 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 S1PR4O95977 384 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 SMIM18P0DKX4 95 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 STARP49675 285 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 CDKN2DP55273 166 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 GABARAPL2P60520 117 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 FCHO2Q0JRZ9 810 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 GK3PQ14409 553 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 NUDT13Q86X67 352 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 SCAIQ8N9R8 606 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 OR4C6Q8NH72 309 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 MUS81Q96NY9 551 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 GFM1Q96RP9 751 aaKnown RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 MRTO4Q9UKD2 239 aaKnown RBP13.43□□□□□ -0.26
SYNPO-205ENST00000522122 PCDHGA4Q9Y5G9 962 aa13.43□□□□□ -0.26
SYNPO-205ENST00000522122 TRBC2A0A5B9 178 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 NME4O00746 187 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 ZNF155Q12901 538 aaPredicted RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 GRIK2Q13002 908 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 CMTR2Q8IYT2 770 aaKnown RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 TMEM102Q8N9M5 508 aaPredicted RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 SLAIN1Q8ND83 568 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 OR5AK3PQ8NH89 298 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 TP53INP1Q96A56 240 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 NSUN5Q96P11 429 aaKnown RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 OR51V1Q9H2C8 321 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 GPN1Q9HCN4 374 aaPredicted RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 XIRP1Q702N8 1843 aaKnown RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 ADAMTSL1Q8N6G6 1762 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 TUBA1BP68363 451 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 PM20D1Q6GTS8 502 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 SMARCD3Q6STE5 483 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 TUBA1AQ71U36 451 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 THOC6Q86W42 341 aaKnown RBP13.42□□□□□ -0.26
SYNPO-205ENST00000522122 TFAP2CQ92754 450 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 C12orf66Q96MD2 445 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 PKP4Q99569 1192 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 SLC29A1Q99808 456 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 A0A0D9SEW6 157 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 A0A0G2JN53 185 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 MTMR11A4FU01 709 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 PPP2R2BQ00005 443 aa13.42□□□□□ -0.26
SYNPO-205ENST00000522122 PMS2P3Q13401 168 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms