RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SMAD5Q99717 465 aaKnown RBP-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 Q9N2K0 584 aa-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 NECTIN3Q9NQS3 549 aa-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 ZNF701Q9NV72 531 aaPredicted RBP-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 TBC1D29Q9UFV1 150 aa-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 OSGIN1Q9UJX0 560 aa-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 KCND3Q9UK17 655 aa-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 TMEM184BQ9Y519 407 aaPredicted RBP-1.44□□□□□ -2.64
RNU6-539P-201ENST00000516665 YEATS2Q9ULM3 1422 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 IQANK1A0A1B0GTG1 560 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 TEX48A0A1B0GUV7 120 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 IGKV2-29A2NJV5 120 aaPredicted RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ANKRD61A6NGH8 418 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 EFCAB8A8MWE9 144 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 FAM90A23PA8MXZ1 464 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 GAPDHSO14556 408 aaPredicted RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 FPGTO14772 594 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 NBR2O15453 112 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 IGHG1P01857 330 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 RHOXF2BP0C7M4 288 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 HSPA6P17066 643 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 PEX2P28328 305 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 SERPINA4P29622 427 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 PTGER4P35408 488 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 BRCC3P46736 316 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ACTA2P62736 377 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ACTC1P68032 377 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 FAM193AP78312 1265 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 CX3CL1P78423 397 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 PTP4A2Q12974 167 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 MLF2Q15773 248 aaPredicted RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ITPRIPL2Q3MIP1 535 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ALDH1L2Q3SY69 923 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ARL6IP4Q66PJ3 421 aaKnown RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ZNF880Q6PDB4 577 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 CCDC117Q8IWD4 279 aaPredicted RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 CNTROBQ8N137 903 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ZNF567Q8N184 647 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 SLC22A18ASQ8N1D0 253 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 FSIP1Q8NA03 581 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 SLC37A3Q8NCC5 494 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 MORC4Q8TE76 937 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 IPO4Q8TEX9 1081 aaKnown RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 CNOT9Q92600 299 aaKnown RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 MYDGFQ969H8 173 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 TSNARE1Q96NA8 513 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 KIR2DL4Q99706 377 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 ABHD6Q9BV23 337 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 VN1R1Q9GZP7 353 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 G6PC2Q9NQR9 355 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 CACNG4Q9UBN1 327 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 OR14J1Q9UGF5 321 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 MTUS1Q9ULD2 1270 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 PNMA8BQ9ULN7 279 aaPredicted RBP-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 HSF4Q9ULV5 492 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 CORO2BQ9UQ03 480 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 COL4A1P02462 1669 aa-1.45□□□□□ -2.64
RNU6-539P-201ENST00000516665 TNXBP22105 4242 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 FOXI3A8MTJ6 420 aaPredicted RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 C3orf84H3BNL1 204 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 TMEM189-UBE2V1I3L0A0 370 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PIP5K1BO14986 540 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 GPAA1O43292 621 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 SPRY1O43609 319 aaPredicted RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 ASNA1O43681 348 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PLPP2O43688 288 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 MMP1P03956 469 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 SLC35E2P0CK97 266 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 MAGEA9P43362 315 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 ZNF131P52739 623 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 RPS8P62241 208 aaKnown RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 ACTA1P68133 377 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 FMODQ06828 376 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 UBE2V1Q13404 147 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PDE1CQ14123 709 aaPredicted RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 ABRAXAS2Q15018 415 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 TAF11Q15544 211 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PHLDA2Q53GA4 152 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 CPLX2Q6PUV4 134 aaKnown RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 LINGO4Q6UY18 593 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PIWIL3Q7Z3Z3 882 aaKnown RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 CCDC13Q8IYE1 715 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 ZNF664Q8N3J9 261 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 LINS1Q8NG48 757 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 RBM17Q96I25 401 aaKnown RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 DDOQ99489 341 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 ZNF350Q9GZX5 532 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 DENND2DQ9H6A0 471 aaPredicted RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 EPHX3Q9H6B9 360 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 JMJD4Q9H9V9 463 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PRMT7Q9NVM4 692 aaPredicted RBP-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 IP6K2Q9UHH9 426 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 DUSP12Q9UNI6 340 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 SATB2Q9UPW6 733 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 SNX13Q9Y5W8 968 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 CR1P17927 2039 aa-1.46□□□□□ -2.64
RNU6-539P-201ENST00000516665 PARD3Q8TEW0 1356 aa-1.47□□□□□ -2.64
RNU6-539P-201ENST00000516665 A0A1B0GWB2 263 aa-1.47□□□□□ -2.64
RNU6-539P-201ENST00000516665 FSD2A1L4K1 749 aa-1.47□□□□□ -2.64
RNU6-539P-201ENST00000516665 A6NDX4 124 aa-1.47□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms