RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 BARD1Q99728 777 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 RTFDC1Q9BY42 306 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 BRINP2Q9C0B6 783 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 NKX1-2Q9UD57 310 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 NUBP2Q9Y5Y2 271 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ADGBQ8N7X0 1667 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 PROM1O43490 865 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 OR8U9P0C7N5 309 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 POU2F1P14859 743 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 HOXC12P31275 282 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC6A6P31641 620 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CLCN7P51798 805 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SPIN4Q56A73 249 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SFT2D3Q587I9 215 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CLVS2Q5SYC1 327 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TSTD2Q5T7W7 516 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 VTCN1Q7Z7D3 282 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ZSWIM9Q86XI8 627 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM139Q8IV31 216 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 C12orf45Q8N5I9 185 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 JAGN1Q8N5M9 183 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SAMD12Q8N8I0 201 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 OR4C15Q8NGM1 316 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 NEIL3Q8TAT5 605 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 RNF121Q9H920 327 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 MEPEQ9NQ76 525 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 FBXL21Q9UKT6 434 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 COLEC10Q9Y6Z7 277 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CHD1O14646 1710 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 OR4F21O95013 312 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC35G6P0C7Q6 338 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 NT5EP21589 574 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ADRA1BP35368 520 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 FRKP42685 505 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 RFX5P48382 616 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF616Q08AN1 781 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 UGT3A2Q3SY77 523 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TOR1AIP1Q5JTV8 583 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SMYD5Q6GMV2 418 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF598Q86UK7 904 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CASTOR1Q8WTX7 329 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 HEPHQ9BQS7 1158 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TP63Q9H3D4 680 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 GLTPQ9NZD2 209 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 NPAP1Q9NZP6 1156 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 LRFN1Q9P244 771 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM14AQ9Y6G1 99 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 A0A1W2PRB8 838 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SOX30O94993 753 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CHATP28329 748 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 GMPRP36959 345 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 WDR4P57081 412 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 RD3Q7Z3Z2 195 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF34Q8IZ26 560 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 DNAJC22Q8N4W6 341 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 TOP6BLQ8N6T0 577 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 YIPF7Q8N8F6 280 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 COX18Q8N8Q8 333 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ZSCAN4Q8NAM6 433 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CHDHQ8NE62 594 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SGTBQ96EQ0 304 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CSPG4P5Q96PW8 444 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 FERD3LQ96RJ6 166 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 CD180Q99467 661 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 GPR21Q99679 349 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SYT3Q9BQG1 590 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 ZBTB26Q9HCK0 441 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 NEUROD4Q9HD90 331 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 PHPT1Q9NRX4 125 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 SERINC1Q9NRX5 453 aa10.94□□□□□ -0.66
LIMCH1-217ENST00000512946 E7EQ34 232 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 MAFKO60675 156 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 MITFO75030 526 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 UPP2O95045 317 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 TPT1P13693 172 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 RHOQP17081 205 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 MPIP34949 423 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 DGKQP52824 942 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC26A5P58743 744 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 GRIK2Q13002 908 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 FAM69AQ5T7M9 428 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 CLEC6AQ6EIG7 209 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 C3P1Q6ZMU1 363 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 GPR135Q8IZ08 494 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 PLD5Q8N7P1 536 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 ZMIZ2Q8NF64 920 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 SETD7Q8WTS6 366 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 FANCFQ9NPI8 374 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 PLEKHM1Q9Y4G2 1056 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 NLRP1Q9C000 1473 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 SPATA31A6Q5VVP1 1343 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 H3BRB1 525 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 AGRPO00253 132 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 E2F3O00716 465 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 CAPN5O15484 640 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 PBX3P40426 434 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 CRISP1P54107 249 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 FGFBP1Q14512 234 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 DUOXA1Q1HG43 343 aa10.93□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM69Q5SWH9 247 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms