RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PHACTR4Q8IZ21 702 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PTGR2Q8N8N7 351 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF565Q8N9K5 539 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 OR52K2Q8NGK3 314 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SIGLEC11Q96RL6 698 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SEMA4BQ9NPR2 832 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 CLCA1A8K7I4 914 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 CPB1P15086 417 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PTPRAP18433 802 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 RAB3BP20337 219 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 HOXA9P31269 272 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 NNMTP40261 264 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 CLDN20P56880 219 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SSTP61278 116 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 ERVK-25P63136 954 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 TCP10Q12799 353 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SMAD2Q15796 467 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PFKFB4Q16877 469 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 C10orf62Q5T681 223 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 ESRP1Q6NXG1 681 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC22A9Q8IVM8 553 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 NIM1KQ8IY84 436 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 REG4Q9BYZ8 158 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 COMMD3Q9UBI1 195 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 ELOVL7A1L3X0 281 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 K7ERI5 159 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 AP2A1O95782 977 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 LTA4HP09960 611 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 DNASE1P24855 282 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 ACADLP28330 430 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 SOX3P41225 446 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 CAPZA1P52907 286 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 NPRL3Q12980 569 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PRKG2Q13237 762 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PAQR7Q86WK9 346 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 RBFAQ8N0V3 343 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 GHDCQ8N2G8 530 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 ASZ1Q8WWH4 475 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 HBEGFQ99075 208 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 P2RY13Q9BPV8 354 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 DPH7Q9BTV6 452 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 B3GNT5Q9BYG0 378 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 POLR3FQ9H1D9 316 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 MIXL1Q9H2W2 232 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 PDLIM7Q9NR12 457 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 TRPM5Q9NZQ8 1165 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 VAPAQ9P0L0 249 aa11.69□□□□□ -0.54
LIMCH1-213ENST00000511496 NAV1Q8NEY1 1877 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 A0A087X1B8 175 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 MFSD2BA6NFX1 497 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 ZBTB24O43167 697 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 PROM1O43490 865 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 HRO43593 1189 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 MLYCDO95822 493 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 CXCL3P19876 107 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SDHBP21912 280 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC1A2P43004 574 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 AIF1P55008 147 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 KIAA1024LP59773 190 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 PTPN11Q06124 597 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 HNRNPA0Q13151 305 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 KLHL22Q53GT1 634 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF789Q5FWF6 425 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SHQ1Q6PI26 577 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 DLEU7Q6UYE1 221 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 GPRIN3Q6ZVF9 776 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM179Q6ZVK1 233 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SMIM5Q71RC9 77 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SMG7Q92540 1137 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM175Q9BSA9 504 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC28A3Q9HAS3 691 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 PFDN2Q9UHV9 154 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC9A8Q9Y2E8 581 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF451Q9Y4E5 1061 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 GFRA2O00451 464 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 FFAR3O14843 346 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 GPR42O15529 346 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SIGLEC6O43699 453 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SLC43A1O75387 559 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 PRAMEF1O95521 474 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 F9P00740 461 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 ADRA1BP35368 520 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 CSRP3P50461 194 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 ARFIP1P53367 373 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 APOBEC3HQ6NTF7 200 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 UNC5DQ6UXZ4 953 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 NLRC3Q7RTR2 1065 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 DNAJC22Q8N4W6 341 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 OR11H7Q8NGC8 314 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 IL31RAQ8NI17 732 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 NETO1Q8TDF5 533 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 TMEM143Q96AN5 459 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 PABPC5Q96DU9 382 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 NTPCRQ9BSD7 190 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 TRMOQ9BU70 441 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 TMPRSS4Q9NRS4 437 aa11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 SAMHD1Q9Y3Z3 626 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-213ENST00000511496 NHSQ6T4R5 1651 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 LCHNA4D1U4 455 aa11.67□□□□□ -0.54
LIMCH1-213ENST00000511496 DHX15O43143 795 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms