RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RSPH9Q9H1X1 276 aaPredicted RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 ATP13A3Q9H7F0 1226 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 DNAJC17Q9NVM6 304 aaKnown RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 TMEM161AQ9NX61 479 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLCO1C1Q9NYB5 712 aa3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 PA2G4Q9UQ80 394 aaKnown RBP3.62□□□□□ -1.83
HMGB1P28-201ENST00000507778 IGHV4-4A0A075B6R2 117 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 TRAV18A0A075B6X5 111 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 ILVBLA1L0T0 632 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 LRRD1A4D1F6 860 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 MSGN1A6NI15 193 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 FPGTO14772 594 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 CTDSPLO15194 276 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 FMO6PO60774 539 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 GH1P01241 217 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 ATP1B1P05026 303 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PATE4P0C8F1 98 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 SP9P0CG40 484 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 EEF2P13639 858 aaKnown RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 CEACAM1P13688 526 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PIK3R1P27986 724 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 OAS2P29728 719 aaKnown RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 SNU13P55769 128 aaKnown RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 ASIC1P78348 528 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 EXT1Q16394 746 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 SMU1Q2TAY7 513 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 KBTBD12Q3ZCT8 623 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 GLRA4Q5JXX5 417 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 FFAR4Q5NUL3 377 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PSRC1Q6PGN9 363 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRSS55Q6UWB4 352 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 GPR141Q7Z602 305 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PIGWQ7Z7B1 504 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 APLFQ8IW19 511 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 CCDC60Q8IWA6 550 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 UNC45BQ8IWX7 931 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 CLYBLQ8N0X4 340 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 LSMEM2Q8N112 164 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRSS35Q8N3Z0 413 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 GBP7Q8N8V2 638 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 TMEM178AQ8NBL3 297 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC37A3Q8NCC5 494 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 GPRC5AQ8NFJ5 357 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR1L3Q8NH93 324 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 TMEM190Q8WZ59 177 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF501Q96CX3 271 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 C10orf90Q96M02 699 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 LPAR4Q99677 370 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 NKX3-1Q99801 234 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 FSD1Q9BTV5 496 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 UBQLN3Q9H347 655 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 C10orf88Q9H8K7 445 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 SRD5A3Q9H8P0 318 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 RAVER2Q9HCJ3 691 aaKnown RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 IL1RAPL2Q9NP60 686 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 RAB9BQ9NP90 201 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF71Q9NQZ8 489 aaPredicted RBP3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 PDRG1Q9NUG6 133 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 C2orf42Q9NWW7 574 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 IL36AQ9UHA7 158 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 FBXL5Q9UKA1 691 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 KLK4Q9Y5K2 254 aa3.61□□□□□ -1.83
HMGB1P28-201ENST00000507778 SNURFLB1AK76 121 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 HHLA1C9JL84 531 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 NPIPA3F8WFD2 350 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 CRCPO75575 148 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 RAD51DO75771 328 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 KRT33AO76009 404 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC16A8O95907 504 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 AMBPP02760 352 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 VTNP04004 478 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 YES1P07947 543 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 C8orf89P0DMQ9 161 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRKAR1AP10644 381 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC2A2P11168 524 aaPredicted RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 DUTP33316 252 aaKnown RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 FRKP42685 505 aaPredicted RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 IER3P46695 156 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 LBX1P52954 281 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 STX1BP61266 288 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SP3Q02447 781 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SGCGQ13326 291 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 TRIM29Q14134 588 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 RCN2Q14257 317 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 MORF4L2Q15014 288 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF674Q2M3X9 581 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF876PQ49A33 203 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 IQCCQ4KMZ1 466 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF789Q5FWF6 425 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 NHLRC1Q6VVB1 395 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 USP43Q70EL4 1123 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 CPEB2Q7Z5Q1 589 aaKnown RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRUNE1Q86TP1 453 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SNX32Q86XE0 403 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 FAM89BQ8N5H3 189 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 C10orf53Q8N6V4 93 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 AMER3Q8N944 861 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 LRTM2Q8N967 370 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR4C15Q8NGM1 316 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 FAM76AQ8TAV0 307 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms