RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 EBPLQ9BY08 206 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 TOR3AQ9H497 397 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 TM9SF3Q9HD45 589 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 PRM3Q9NNZ6 103 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 DYRK4Q9NR20 520 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 AASDHPPTQ9NRN7 309 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 ATAD3AQ9NVI7 634 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 ZNF282Q9UDV7 671 aaPredicted RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 PCDHB11Q9Y5F2 797 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 MGAT4DA6NG13 374 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 FOXE1O00358 373 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 VEGFDO43915 354 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DPM1O60762 260 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 PRAMEF4O60810 478 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DNAJB5O75953 348 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 C1orf105O95561 183 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CPNE6O95741 557 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ITGAMP11215 1152 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 EPCAMP16422 314 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 JUNBP17275 347 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 TIA1P31483 386 aaKnown RBP eCLIP11.57□□□□□ -0.56
NUP54-202ENST00000502850 SLC5A2P31639 672 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 BDKRB1P46663 353 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 PREPP48147 710 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DPTQ07507 201 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DDX39BQ13838 428 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 TEAD4Q15561 434 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CCDC85BQ15834 202 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 FNDC3BQ53EP0 1204 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 PRAMEF9Q5VWM5 478 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 GALNT18Q6P9A2 607 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 SPESP1Q6UW49 350 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 TMEM26Q6ZUK4 368 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ANKRD46Q86W74 232 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CLVS1Q8IUQ0 354 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 ZDHHC21Q8IVQ6 265 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 FAM86B1Q8N7N1 296 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ARL10Q8N8L6 244 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 NETO1Q8TDF5 533 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 SNX19Q92543 992 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ISOC1Q96CN7 298 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 C11orf24Q96F05 449 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 MUS81Q96NY9 551 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 BHLHE41Q9C0J9 482 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 DPEP2Q9H4A9 486 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CARS2Q9HA77 564 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 FAM118AQ9NWS6 357 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 GPR34Q9UPC5 381 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 HSPE1-MOB4S4R3N1 261 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DOCK6Q96HP0 2047 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CHD9Q3L8U1 2897 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 PRUNE2Q8WUY3 3088 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 C1QTNF3-AMACRE9PGA6 284 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ABCB7O75027 752 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 SLC16A8O95907 504 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 GSNP06396 782 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ABCB1P08183 1280 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 ANXA4P09525 319 aaPredicted RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 ENGP17813 658 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DDX5P17844 614 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 CD22P20273 847 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DCKP27707 260 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DCTP40126 519 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CDKN2CP42773 168 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 GPR1P46091 355 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 NTHL1P78549 312 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 SKIV2LQ15477 1246 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 NKG7Q16617 165 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 HNRNPA1L2Q32P51 320 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 RAET1GQ6H3X3 334 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CES5AQ6NT32 575 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ZCCHC8Q6NZY4 707 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 UNC5DQ6UXZ4 953 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ZNF621Q6ZSS3 439 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 NPAS3Q8IXF0 933 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 SYTL1Q8IYJ3 562 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 OR7G3Q8NG95 312 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 OR9A1PQ8NGU1 263 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CHTF18Q8WVB6 975 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 RAB7BQ96AH8 199 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 ZSWIM3Q96MP5 696 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 MTERF1Q99551 399 aaKnown RBP11.57□□□□□ -0.56
NUP54-202ENST00000502850 RAD21L1Q9H4I0 556 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 POLR1BQ9H9Y6 1135 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CERS4Q9HA82 394 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 CXorf21Q9HAI6 301 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 TRIM39Q9HCM9 518 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 IL1RAPQ9NPH3 570 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 SLC6A13Q9NSD5 602 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 DEC1Q9P2X7 70 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 FAM8A1Q9UBU6 413 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 VPS4AQ9UN37 437 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 TSC22D4Q9Y3Q8 395 aa11.57□□□□□ -0.56
NUP54-202ENST00000502850 EYSQ5T1H1 3165 aa11.56□□□□□ -0.56
NUP54-202ENST00000502850 TMEM202A6NGA9 273 aa11.56□□□□□ -0.56
NUP54-202ENST00000502850 RFXAPO00287 272 aa11.56□□□□□ -0.56
NUP54-202ENST00000502850 RNASET2O00584 256 aaKnown RBP11.56□□□□□ -0.56
NUP54-202ENST00000502850 NPC1O15118 1278 aa11.56□□□□□ -0.56
NUP54-202ENST00000502850 SLC16A6O15403 523 aa11.56□□□□□ -0.56
NUP54-202ENST00000502850 HS6ST1O60243 411 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms